sfu-compbio / mrsfastLinks
mrsFAST: micro-read substitution-only Fast Alignment Search Tool
☆28Updated 5 years ago
Alternatives and similar repositories for mrsfast
Users that are interested in mrsfast are comparing it to the libraries listed below
Sorting:
- BWT-based index for graphs☆73Updated 10 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 4 years ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆47Updated last year
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- Substring index for paths in a graph☆60Updated 3 weeks ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- ☆49Updated 3 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- Aligner for sequencing data☆21Updated 9 years ago
- a string to graph aligner☆41Updated 9 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆71Updated 3 years ago
- The Platinum Genomes Truthset☆89Updated 8 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆112Updated 2 months ago
- scripts to parse IrysView output☆39Updated 10 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- ☆49Updated last year
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆102Updated 3 weeks ago
- Global alignment and alignment extension☆141Updated 2 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 8 years ago