sfu-compbio / mrsfastLinks
mrsFAST: micro-read substitution-only Fast Alignment Search Tool
☆28Updated 4 years ago
Alternatives and similar repositories for mrsfast
Users that are interested in mrsfast are comparing it to the libraries listed below
Sorting:
- scripts to parse IrysView output☆39Updated 9 years ago
- Global alignment and alignment extension☆134Updated 2 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 2 months ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- ☆30Updated 8 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 7 years ago
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆63Updated 6 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆99Updated 8 months ago
- ☆49Updated 2 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last month
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- a string to graph aligner☆41Updated 9 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 7 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Find all significant local alignments between reads☆141Updated last year
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆44Updated 8 months ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago