ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network
☆15Mar 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for ChromBERT
Users that are interested in ChromBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆22Mar 24, 2026Updated 3 weeks ago
- High performance pytorch modules☆18Jan 14, 2023Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- ☆17Sep 13, 2024Updated last year
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- A Collection of Platform, Tools, and Resources for Antibody Engineering☆21Jun 30, 2023Updated 2 years ago
- A tool for motif annotation and visualization in tandem repeats.☆11May 26, 2025Updated 10 months ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- MAss spectra alignment tool for MSI data☆20Jun 6, 2022Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- A simple framework for building agents.☆47Apr 9, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- A foundation model for single-cell epigenomic data☆62Jan 6, 2026Updated 3 months ago
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated 11 months ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆47Mar 4, 2025Updated last year
- PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and vis…☆38Updated this week
- AI-powered post-writing toolkit for academic papers — format validation, grammar/style polishing, de-AI editing, reference checking, and …☆132Updated this week
- Basic GCMS File Import and Fitting☆10May 22, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12May 14, 2025Updated 11 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆81Oct 31, 2024Updated last year
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆17Nov 13, 2024Updated last year
- ☆18Nov 12, 2025Updated 5 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 9 months ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- ☆17Sep 16, 2021Updated 4 years ago
- PyTorch interface for TrueGrad Optimizers☆43Aug 8, 2023Updated 2 years ago
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆22May 4, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Apr 9, 2026Updated last week
- ☆28Sep 28, 2024Updated last year
- A tool for summarizing, extracting, generating and modifying DNA sequences.☆23Dec 17, 2024Updated last year
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated last month
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 12, 2026Updated last week
- General purpose utility related to GAF files☆29Updated this week