atong01 / MultiscaleEMD
Multiscale earth mover's distance methods for tree and manifold structured data
☆11Updated last year
Alternatives and similar repositories for MultiscaleEMD:
Users that are interested in MultiscaleEMD are comparing it to the libraries listed below
- ☆10Updated last year
- ☆58Updated last year
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆68Updated last year
- Multi-omic single-cell optimal transport tools☆132Updated last week
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆125Updated 3 months ago
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- ☆23Updated last month
- Invariant Representation learning☆14Updated 7 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆39Updated 2 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆58Updated 9 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated last month
- single cell foundation model for Gene network inference and more☆15Updated 5 months ago
- Global Waddington-OT☆22Updated 6 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆94Updated 6 months ago
- ☆45Updated 2 years ago
- Learning cell communication from spatial graphs of cells☆105Updated last year
- Git Repo for simulating Boolean Models☆33Updated 8 months ago
- ☆28Updated last month
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆19Updated 3 weeks ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated 10 months ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated 10 months ago
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆29Updated last month
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- ☆17Updated 3 years ago
- ☆72Updated 6 months ago
- spatial transcriptome, single cell☆67Updated last year
- End-to-end analysis of spatial multi-omics data☆39Updated this week
- Models and datasets for perturbational single-cell omics☆148Updated 2 years ago
- A model developed for the generation of scRNA-seq data☆48Updated last week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆54Updated this week