Alternatives and similar repositories for phylogenetic_biology

Users that are interested in phylogenetic_biology are comparing it to the libraries listed below

• balabanmetin / apples
  distance based phylogenetic placement
  ☆27Updated last year
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 6 years ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆49Updated last week
• balabanmetin / uDance
  ☆43Updated last year
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 4 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆33Updated last year
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆57Updated 4 years ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆34Updated last month
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 3 weeks ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated last year
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆34Updated last year
• davidrasm / Espalier
  Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.
  ☆12Updated 2 years ago
• aaronmussig / PhyloDM
  Efficient calculation of phylogenetic distance matrices.
  ☆48Updated 9 months ago
• fawaz-dabbaghieh / PanPA
  PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.
  ☆13Updated 5 months ago
• soedinglab / transannot
  TransAnnot - a fast transcriptome annotation pipeline
  ☆17Updated 6 months ago
• ariloytynoja / prank-msa
  Automatically exported from code.google.com/p/prank-msa
  ☆28Updated 3 months ago
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆22Updated 5 years ago
• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆11Updated 7 years ago
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆18Updated 5 months ago
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆42Updated last year
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• Jstacs / Jstacs
  ☆19Updated last month
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated 10 months ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆23Updated last month
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆36Updated 4 months ago
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 7 months ago