Alternatives and similar repositories for phylogenetic_biology

Users that are interested in phylogenetic_biology are comparing it to the libraries listed below

• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated 3 months ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 4 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated last month
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆23Updated 6 years ago
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆19Updated 7 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 3 months ago
• fawaz-dabbaghieh / PanPA
  PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.
  ☆14Updated 7 months ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆20Updated 5 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆16Updated 11 months ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆24Updated last month
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated last year
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆12Updated 8 years ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 3 months ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆33Updated 2 years ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 5 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• cfe-lab / MiCall
  Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
  ☆18Updated this week
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆27Updated last month
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆30Updated last year
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆32Updated 6 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆23Updated 2 months ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• opengenomebrowser / opengenomebrowser
  ☆17Updated last year