A book for my course
☆28Sep 4, 2026Updated last month
Alternatives and similar repositories for phylogenetic_biology
Users that are interested in phylogenetic_biology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated this week
- ☆16Apr 11, 2026Updated 6 months ago
- Methods for the analyses described in Moody et al. 2024 (https://www.nature.com/articles/s41559-024-02461-1)☆13Dec 10, 2025Updated 10 months ago
- visualization of phylogenetic output files☆15Oct 23, 2023Updated 2 years ago
- Course material for the Madrid ASDM class on text mining (C09)☆12Jul 5, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 4 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- Create, modify and analyse phylogenetic trees in R☆24Updated this week
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Quartet-based estimation of species trees, trees of blobs, and level-1 networks☆16Sep 22, 2026Updated 3 weeks ago
- ☆43Apr 2, 2024Updated 2 years ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆18Oct 5, 2026Updated last week
- ☆21Oct 21, 2024Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆92Oct 9, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Synteny matrix representation with maximum likelihood pipeline☆17Jul 7, 2021Updated 5 years ago
- snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage a…☆17Oct 1, 2026Updated 2 weeks ago
- A phylogeny dating method using least-squares algorithms and criteria☆37Oct 25, 2024Updated last year
- Implementation of the TreeShrink problem☆59May 28, 2026Updated 4 months ago
- A Hatch plugin to enable building a conda package from your pyproject.toml without having to write a separate conda build recipe meta.yam…☆11Apr 24, 2025Updated last year
- Archive of Online Practical Materials for the book of Modern Phylogenetic Comparative Methods (ed. Garamszegi, 2014)☆25Jun 16, 2023Updated 3 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆95Oct 5, 2026Updated last week
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆72Mar 10, 2021Updated 5 years ago
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Dec 20, 2022Updated 3 years ago
- Sorting and subsampling phylogenomic datasets☆35Apr 9, 2025Updated last year
- Calculate distances between phylogenetic trees in R☆40Updated this week
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆91Updated this week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated 2 years ago
- Tumor type classifier using cancer genomic panel sequencing data☆14Mar 12, 2024Updated 2 years ago
- ☆25Feb 24, 2026Updated 7 months ago
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Taxonomy-aware DNA sequence processing toolkit☆34Sep 25, 2026Updated 3 weeks ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆21Jan 14, 2026Updated 9 months ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆13Apr 25, 2022Updated 4 years ago
- A Rust-based library for phylogenetic analysis and manipulation☆22Aug 8, 2026Updated 2 months ago
- Inference of Ortholog Groups using Hidden Markov Models☆39Updated this week
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆26Feb 26, 2026Updated 7 months ago
- Permutation Tests for Linear Models☆16Nov 21, 2025Updated 10 months ago