A book for my course
☆23Oct 14, 2025Updated 4 months ago
Alternatives and similar repositories for phylogenetic_biology
Users that are interested in phylogenetic_biology are comparing it to the libraries listed below
Sorting:
- ☆12May 12, 2019Updated 6 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- ☆22Updated this week
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 26, 2026Updated last week
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆23Sep 30, 2025Updated 5 months ago
- HyPhy standalone analyses☆53Jan 5, 2026Updated 2 months ago
- Genome-Genome circle synteny☆25Dec 1, 2023Updated 2 years ago
- distance based phylogenetic placement☆27Feb 28, 2024Updated 2 years ago
- Using ggtree to Visualize Data on Tree-Like Structure☆25Mar 6, 2020Updated 6 years ago
- ☆16Aug 17, 2023Updated 2 years ago
- An R package with toolkits for tong's friends☆11Mar 18, 2025Updated 11 months ago
- ☆26Feb 24, 2026Updated 2 weeks ago
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 6 years ago
- ☆28Apr 9, 2025Updated 11 months ago
- Taxonomy-aware DNA sequence processing toolkit☆33Feb 23, 2026Updated 2 weeks ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆29Sep 15, 2023Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Sep 19, 2024Updated last year
- ☆29Mar 27, 2024Updated last year
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- An R Package for Multiplex PCR Primer Design and Analysis☆30Jul 12, 2025Updated 7 months ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Nov 28, 2023Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- A fork of exonerate: a generic tool for sequence alignment☆71Nov 30, 2023Updated 2 years ago
- Flutrack platform gathers flu related tweets from the entire world, with searching tag, words that are influenza synonyms and flu symptom…☆13Apr 22, 2019Updated 6 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆14Mar 3, 2026Updated last week
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Feb 26, 2026Updated last week
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated 2 weeks ago
- Protein Purification☆11Dec 7, 2016Updated 9 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.☆36Aug 23, 2023Updated 2 years ago
- Processing pipeline for pan-genome visulization and exploration☆144Oct 9, 2023Updated 2 years ago
- Genome Annotation Pipeline☆43Aug 20, 2024Updated last year
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- ☆16Jan 14, 2026Updated last month
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 7 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆48Jun 30, 2025Updated 8 months ago
- ☆14Jul 4, 2015Updated 10 years ago