Alternatives and similar repositories for phylogenetic_biology

Users that are interested in phylogenetic_biology are comparing it to the libraries listed below

• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆34Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 3 weeks ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• aaronmussig / PhyloDM
  Efficient calculation of phylogenetic distance matrices.
  ☆48Updated 10 months ago
• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆12Updated 7 years ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆51Updated 2 weeks ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆23Updated 2 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 2 months ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 5 years ago
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆19Updated 6 months ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆52Updated 3 months ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated last month
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆23Updated 6 years ago
• balabanmetin / uDance
  ☆42Updated last year
• fmfi-compbio / osprey
  Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.
  ☆15Updated 3 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 6 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆71Updated 2 months ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆20Updated 5 years ago
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated last year
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated 7 years ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• balabanmetin / apples
  distance based phylogenetic placement
  ☆27Updated last year
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆22Updated last month
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆35Updated 3 months ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆31Updated 6 years ago