The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.
☆12Apr 5, 2026Updated 6 months ago
Alternatives and similar repositories for MitoGeneExtractor
Users that are interested in MitoGeneExtractor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package supporting interactive data access on BOLD☆27Aug 20, 2026Updated 2 months ago
- ☆13Dec 22, 2025Updated 10 months ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆13Oct 2, 2024Updated 2 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- Quartet-based estimation of species trees, trees of blobs, and level-1 networks☆16Sep 22, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Jul 16, 2018Updated 8 years ago
- ☆16Apr 11, 2026Updated 6 months ago
- Helper R scripts for multiple PERMANOVA tests, AICc script for PERMANOVA, etc.☆12Feb 26, 2024Updated 2 years ago
- Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.☆11Nov 14, 2024Updated last year
- ☆36May 29, 2024Updated 2 years ago
- Bug flow is a community resource for entomological collection digitization workflows and modules.☆25Jul 19, 2024Updated 2 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- A compositional bias testing and pruning tool for multiple sequence alignments☆13Jun 16, 2026Updated 4 months ago
- distance based phylogenetic placement☆28Feb 28, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Phyling: phylogenetic inference from annotated genomes☆34Updated this week
- ☆13Jan 29, 2025Updated last year
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Oct 22, 2026Updated last week
- nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks☆11Updated this week
- Tool for DNA species identification based on variation in short k-mer frequencies☆10Aug 4, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated last year
- Scripts and datasets for the analysis on convergent genome evolution of animal terrestrialisation☆16Sep 27, 2025Updated last year
- R package for ecological niche analysis (subniche on CRAN). Refines OMI analysis for realized niche decomposition using marine and enviro…☆11Apr 1, 2026Updated 6 months ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 11 months ago
- A command-line interface for MD-Repo service☆10Oct 6, 2026Updated 3 weeks ago
- Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing☆13Oct 19, 2026Updated last week
- Script to check required packages for Schrödinger suite on Linux machine☆13Sep 17, 2026Updated last month
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- A hybrid summary method for reconstructing species tree from gene trees☆10Jan 6, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A stable place for guidance source code http://guidance.tau.ac.il/ver2/source.php☆14Oct 10, 2023Updated 3 years ago
- Processing protein-coding DNA sequences in frame☆11Updated this week
- Rust library for interacting with the UDisks2 DBus API☆19Nov 3, 2022Updated 3 years ago
- PAGAN2 multiple sequence aligner☆12Sep 4, 2026Updated last month
- ☆17Apr 1, 2018Updated 8 years ago
- Methods for the analyses described in Moody et al. 2024 (https://www.nature.com/articles/s41559-024-02461-1)☆13Dec 10, 2025Updated 10 months ago
- Fast, accurate species tree estimation.☆13Aug 17, 2026Updated 2 months ago