The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.
☆10Apr 5, 2026Updated 3 months ago
Alternatives and similar repositories for MitoGeneExtractor
Users that are interested in MitoGeneExtractor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package supporting interactive data access on BOLD☆24Updated this week
- Quartet-based species tree and tree of blob estimation☆16Jul 3, 2026Updated 2 weeks ago
- ☆16Apr 11, 2026Updated 3 months ago
- ☆11Jul 16, 2018Updated 8 years ago
- ☆34May 29, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bug flow is a community resource for entomological collection digitization workflows and modules.☆25Jul 19, 2024Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Phyling: phylogenetic inference from annotated genomes☆33Updated this week
- ☆13Jan 29, 2025Updated last year
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 10 months ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Jan 3, 2026Updated 6 months ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for ecological niche analysis (subniche on CRAN). Refines OMI analysis for realized niche decomposition using marine and enviro…☆10Apr 1, 2026Updated 3 months ago
- R Port of psmc☆17Mar 16, 2023Updated 3 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆12Jul 11, 2026Updated last week
- Script to check required packages for Schrödinger suite on Linux machine☆12Jun 18, 2026Updated last month
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 8 months ago
- ML phylogenetic inference for non-model organisms with short reads & assemblies☆15Jun 30, 2026Updated 3 weeks ago
- ☆14Jun 23, 2026Updated 3 weeks ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- Terminal ai integrates with most AI APIs☆15Sep 18, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated 2 months ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆14Feb 24, 2025Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- A metagenome assembler for the linked-reads with high-barcode specificity☆10Feb 27, 2026Updated 4 months ago
- Fossil calibrations database☆16Sep 18, 2018Updated 7 years ago
- Learning free energy landscapes using artificial neural networks☆15Nov 30, 2017Updated 8 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 4 years ago
- The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later…☆23Jul 5, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Clann: Investigation of phylogenomic signal using supertrees☆18Updated this week
- An R package for the Monte Carlo simulation of sequence evolution☆19May 6, 2014Updated 12 years ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 5 years ago
- Source code for TreeBASE web application and database☆16May 18, 2026Updated 2 months ago
- From metagenomes to epitopes and beyond☆12Apr 30, 2026Updated 2 months ago
- ☆17Apr 1, 2018Updated 8 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago