cmayer / MitoGeneExtractorLinks
The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.
☆10Updated 4 months ago
Alternatives and similar repositories for MitoGeneExtractor
Users that are interested in MitoGeneExtractor are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆211Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated 3 weeks ago
- snipit: summarise snps relative to your reference sequence☆166Updated 3 weeks ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Updated 2 months ago
- Find endogenous viral elements in genomes☆21Updated 4 months ago
- ☆155Updated last year
- Foreign Contamination Screening caller scripts and documentation☆157Updated 10 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 7 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆143Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆166Updated 9 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆81Updated 9 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- fast phage annotation program☆193Updated last week
- geNomad: Identification of mobile genetic elements☆283Updated 2 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆287Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆247Updated 10 months ago
- ☆232Updated last year
- BSR-Based Allele Calling Algorithm☆147Updated this week
- DDBJ Fast Annotation and Submission Tool☆84Updated 4 months ago
- Reorients assembled microbial sequences☆131Updated 5 months ago
- DAS Tool☆168Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆134Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆102Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 4 months ago
- SKESA assembler☆124Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- ☆33Updated 5 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆127Updated last year