xie186 / ViewBSLinks
ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
☆85Updated last year
Alternatives and similar repositories for ViewBS
Users that are interested in ViewBS are comparing it to the libraries listed below
Sorting:
- Allele-specific alignment sorting☆59Updated 2 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- WisecondorX — An evolved WISECONDOR☆105Updated last month
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆131Updated last year
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆64Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆89Updated 4 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆116Updated 3 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- BISulfite-seq CUI Toolkit☆67Updated last week
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆83Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 2 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆101Updated this week
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆140Updated last month