Alternatives and similar repositories for ViewBS:

Users that are interested in ViewBS are comparing it to the libraries listed below

• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆112Updated 9 months ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆131Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆87Updated 7 months ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆55Updated 2 years ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆108Updated last month
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆62Updated last year
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆97Updated last year
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated last month
• wyang17 / SQuIRE
  Software for Quantifying Interspersed Repeat Expression
  ☆55Updated 2 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated last year
• BSSeeker / BSseeker2
  A versatile aligning pipeline for bisulfite sequencing data
  ☆64Updated 6 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆65Updated 6 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆72Updated 3 years ago
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 5 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆95Updated last year
• CenterForMedicalGeneticsGhent / WisecondorX
  WisecondorX — An evolved WISECONDOR
  ☆97Updated 7 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆114Updated this week
• parklab / bamsnap
  ☆119Updated 5 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆126Updated last week
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆65Updated 2 weeks ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆97Updated 10 months ago
• ay-lab / fithic
  Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…
  ☆84Updated 2 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 4 months ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆127Updated 3 months ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• lh3 / hickit
  TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
  ☆108Updated 4 years ago