khuang28jhu / bs3Links
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
☆27Updated 5 years ago
Alternatives and similar repositories for bs3
Users that are interested in bs3 are comparing it to the libraries listed below
Sorting:
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 3 weeks ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Genomic Association Tester☆31Updated 2 years ago
- ☆22Updated 5 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆23Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Tools for analyzing DNA methylation data☆41Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- ☆28Updated last month
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year