khuang28jhu / bs3
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
☆27Updated 5 years ago
Alternatives and similar repositories for bs3:
Users that are interested in bs3 are comparing it to the libraries listed below
- 4C-seq processing pipeline☆23Updated 10 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 weeks ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆25Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- ☆24Updated 2 years ago
- Genomic Association Tester☆30Updated last year
- Tutorial Website☆56Updated 4 years ago
- Find and characterise transposable element insertions☆21Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- ☆13Updated last year
- ☆21Updated 2 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 9 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆58Updated 4 months ago
- ☆25Updated 2 weeks ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago