Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.
☆10Apr 8, 2026Updated last week
Alternatives and similar repositories for AmpliconArchitect
Users that are interested in AmpliconArchitect are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆79Apr 8, 2026Updated last week
- A script to make downloading of SRA/GEO data easier☆33Oct 6, 2023Updated 2 years ago
- ☆21Jun 29, 2022Updated 3 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆159Jun 18, 2024Updated last year
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Mar 19, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆29Oct 10, 2025Updated 6 months ago
- ☆13Jul 26, 2022Updated 3 years ago
- ☆11Mar 4, 2025Updated last year
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. depmixS4 — Dependent Mixture Models - Hidden Markov Models of GLMs and Oth…☆12May 11, 2025Updated 11 months ago
- 复旦大学自动评教脚本☆10Aug 20, 2025Updated 7 months ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- ☆11Apr 25, 2024Updated last year
- Collection of fragmentomic analysis scripts☆13Jul 3, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.☆11Jan 24, 2022Updated 4 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 3 years ago
- ☆14Apr 19, 2020Updated 5 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 3 weeks ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆17Mar 3, 2026Updated last month
- Automatically optimise three of Velvet's assembly parameters.☆49Oct 24, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated 10 months ago
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆24Jun 28, 2024Updated last year
- Tumor-normal variant calling workflow using HiFi reads☆29Mar 4, 2026Updated last month
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Code and simulations using biologically annotated neural networks☆23Aug 23, 2021Updated 4 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆19Dec 9, 2025Updated 4 months ago
- VCWorld: A Biological World Model for Virtual Cell Simulation☆44Apr 7, 2026Updated last week
- Implementation of LTFH++☆11Nov 17, 2025Updated 5 months ago
- 夸克网盘影视资源分享,夸克影视资源搜索,每日发布最新1080P/4K原盘 电视剧、动漫、电影资源。☆23Mar 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- An unofficial experimental port of the Google App Engine SDK to Python 3, using Managed VMs☆12Jan 13, 2015Updated 11 years ago
- download stats of R packages☆14Apr 18, 2025Updated last year
- MUMmer for HPC☆17Jan 7, 2013Updated 13 years ago
- This is a read-only mirror of the CRAN R package repository. forestploter — Create a Flexible Forest Plot. Homepage: https://github.com…☆12Apr 13, 2025Updated last year
- Somatic workflow for Kids-First☆15Apr 9, 2026Updated last week