BAGEL software
☆28Jan 30, 2024Updated 2 years ago
Alternatives and similar repositories for bagel
Users that are interested in bagel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DRUGZ software☆24Aug 9, 2021Updated 4 years ago
- ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design☆14Feb 28, 2023Updated 3 years ago
- My personal repository☆16Mar 13, 2023Updated 3 years ago
- Package to Score Sequences using Rule Set 3☆14Nov 10, 2025Updated 4 months ago
- Core code for the DeepHF prediction tool☆40Jul 23, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- EvolveX, a de novo antibody computational design pipeline.☆23Sep 18, 2025Updated 6 months ago
- Kdrew's scripts for handling protein complex map data☆14Jun 12, 2025Updated 9 months ago
- ☆14Jun 4, 2023Updated 2 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 5 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆54Apr 28, 2023Updated 2 years ago
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆26Jul 28, 2022Updated 3 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Modeling of time series data for CRISPR KO experiments☆38Jan 5, 2026Updated 2 months ago
- Code and examples for optical pooled screens (updated protocol).☆14Jan 28, 2024Updated 2 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- A shiny-based web tool for interactive analysis of DepMap data☆24Feb 13, 2021Updated 5 years ago
- ☆33Nov 9, 2022Updated 3 years ago
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- Tools for assessing clustering robustness☆30Mar 16, 2026Updated last week
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Convert sequence IDs between ucsc/refseq/genbank☆16Aug 28, 2018Updated 7 years ago
- Software for performing UDiTaS sequencing analysis.☆15Dec 22, 2022Updated 3 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated 2 weeks ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- toolkit for analyzing genome editing experiments☆21Mar 3, 2026Updated 3 weeks ago
- A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)☆25Nov 3, 2021Updated 4 years ago
- Flexible analysis of high-content CRISPR screening☆32Mar 6, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- Genomic Association Tester☆35May 2, 2023Updated 2 years ago
- Analysis on stop reasons☆10Jun 17, 2024Updated last year
- ChromBERT: Uncovering Chromatin State Motifs in the Human Genome using a BERT-based Approach☆11Mar 17, 2026Updated last week
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 6 months ago
- ☆32Jul 20, 2018Updated 7 years ago