hart-lab / bagel
BAGEL software
☆27Updated last year
Alternatives and similar repositories for bagel:
Users that are interested in bagel are comparing it to the libraries listed below
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- ☆47Updated 2 years ago
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ☆14Updated 2 years ago
- binned motif enrichment analysis and visualisation☆40Updated 3 weeks ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆45Updated 6 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated this week
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated last month
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 4 months ago