mskcc / ngs-filtersLinks
Filters for false-positive mutation calls in NGS
☆30Updated 6 years ago
Alternatives and similar repositories for ngs-filters
Users that are interested in ngs-filters are comparing it to the libraries listed below
Sorting:
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 2 months ago
- ☆33Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- DriverPower☆26Updated 5 months ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆36Updated 5 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Utility functions for FACETS☆37Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆32Updated 2 years ago
- ☆13Updated 7 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year