mskcc / ngs-filtersLinks
Filters for false-positive mutation calls in NGS
☆30Updated 6 years ago
Alternatives and similar repositories for ngs-filters
Users that are interested in ngs-filters are comparing it to the libraries listed below
Sorting:
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- ☆13Updated 7 years ago
- ☆35Updated 5 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated last month
- DriverPower☆26Updated 5 months ago
- ☆24Updated 10 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- BIC@MSKCC Variants Pipeline☆24Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- GTEx analysis scripts☆20Updated 8 years ago