Filters for false-positive mutation calls in NGS
☆34Apr 12, 2019Updated 6 years ago
Alternatives and similar repositories for ngs-filters
Users that are interested in ngs-filters are comparing it to the libraries listed below
Sorting:
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Feb 15, 2026Updated 2 weeks ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 2 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29May 30, 2017Updated 8 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Mar 29, 2021Updated 4 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated 2 weeks ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Feb 27, 2026Updated last week
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Jul 19, 2024Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- ☆35Mar 2, 2021Updated 5 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 10 months ago
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago