ncihtan / data-models
Schema.org Data Models for HTAN
☆14Updated last month
Alternatives and similar repositories for data-models:
Users that are interested in data-models are comparing it to the libraries listed below
- Python API and Jupyter widget for Vitessce☆44Updated last month
- Minimum Information about Tissue Imaging☆20Updated last year
- Framework for image and flow cytometry analysis☆24Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- ☆17Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 3 months ago
- Package for biomedical data model and metadata ingress management☆25Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Raw format to OME-TIFF converter☆50Updated last week
- Curated metadata for all studies published in the Image Data Resource☆14Updated 3 weeks ago
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆13Updated last year
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- ☆17Updated 11 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- GIve easy, high-level access to ome-zarr fileset☆14Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated 2 months ago
- Python project containing Ice remoting code for OMERO☆23Updated 2 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated this week
- MethodsJ2☆14Updated 2 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆18Updated last month
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 3 weeks ago
- ☆34Updated this week
- Interface to the Bioformats Java library☆13Updated last month
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆14Updated 2 weeks ago
- ☆25Updated 5 months ago
- Piecewise alignment for layers of mosaics☆23Updated 2 months ago
- An OMERO.web app for creating Figures from images in OMERO☆16Updated last month