Schema.org Data Models for HTAN
☆15Sep 4, 2025Updated 5 months ago
Alternatives and similar repositories for data-models
Users that are interested in data-models are comparing it to the libraries listed below
Sorting:
- Package for biomedical data model and metadata ingress management☆28Oct 30, 2025Updated 4 months ago
- ☆12Nov 13, 2025Updated 3 months ago
- Reading HDF5 files with Zarr☆11Oct 5, 2021Updated 4 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Nov 7, 2024Updated last year
- A Python package mapping 2D coordinates to colors based on different 2D color maps.☆16Dec 4, 2025Updated 2 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆16Updated this week
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Nov 3, 2025Updated 3 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 6 months ago
- A draft specification for the nifti-zarr format☆16Dec 5, 2025Updated 2 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆20Jul 15, 2025Updated 7 months ago
- An implementation of the Zarr storage format specification for chunked & compressed multidimensional arrays.☆25Apr 22, 2025Updated 10 months ago
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Feb 14, 2026Updated 2 weeks ago
- ☆18Updated this week
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 3 months ago
- A cross-platform binary storage format for sparse data, particularly sparse matrices.☆23Apr 28, 2025Updated 10 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆67Jul 2, 2025Updated 7 months ago
- ☆30Oct 4, 2024Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Software for the analysis and interactive exploration of spectral imaging data☆32Aug 25, 2020Updated 5 years ago
- ☆10Jul 10, 2024Updated last year
- Programmatic interface to Synapse services for Python☆78Updated this week
- Multiple-choice microscopy pipeline☆147Feb 16, 2026Updated last week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Nov 22, 2024Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- A web-based, time-series visualizer for tracked segmented data.☆13Feb 21, 2026Updated last week
- Code and dataset for the paper "Deep Learning Based Glaucoma Detection with Cropped Optic Cup and Disc and Blood Vessel Segmentation"☆10Feb 2, 2025Updated last year
- Automatically interact with SVG charts.☆19Sep 23, 2025Updated 5 months ago
- describing the FISMA Ready project and its goals☆12Mar 20, 2019Updated 6 years ago
- ☆11Feb 26, 2024Updated 2 years ago
- ☆11Updated this week
- A modular framework for image processing and analysis, aimed at the biological sciences☆13Oct 16, 2013Updated 12 years ago
- ☆12Apr 3, 2025Updated 10 months ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆11Updated this week
- Automated Quantitative Trait Locus Analysis (AutoQTL)☆10Mar 5, 2024Updated last year
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Feb 20, 2026Updated last week
- This repository provides an interface in MATLAB to read and write Zarr files. Zarr is a file format for scientific data (like HDF5 and ne…☆18Jan 9, 2026Updated last month