ncihtan / data-models
Schema.org Data Models for HTAN
☆14Updated this week
Related projects ⓘ
Alternatives and complementary repositories for data-models
- Minimum Information about Tissue Imaging☆20Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Python API and Jupyter widget for Vitessce☆40Updated this week
- GIve easy, high-level access to ome-zarr fileset☆13Updated 3 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 9 months ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- ☆14Updated this week
- MethodsJ2☆14Updated 2 years ago
- Python project containing Ice remoting code for OMERO☆22Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆25Updated last week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆16Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated last year
- Framework for image and flow cytometry analysis☆12Updated last week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆13Updated 2 weeks ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆50Updated 6 months ago
- An OMERO.web app for creating Figures from images in OMERO☆15Updated 2 weeks ago
- Curated metadata for all studies published in the Image Data Resource☆14Updated this week
- Your Personal Assistant in Computational Bioimaging.☆35Updated 2 months ago
- Interactive visualization of spatial omics data☆41Updated this week
- Interface to the Bioformats Java library☆11Updated 3 weeks ago
- Piecewise alignment for layers of mosaics☆20Updated this week
- ☆31Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆13Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆37Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- Experimental micro-service for implementing the Zarr spec over HTTP☆17Updated last month
- ☆23Updated last month
- Image registration (alignment) software for large microscopy images☆21Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago