ncihtan / data-modelsLinks
Schema.org Data Models for HTAN
☆15Updated 5 months ago
Alternatives and similar repositories for data-models
Users that are interested in data-models are comparing it to the libraries listed below
Sorting:
- Python API and Jupyter widget for Vitessce☆61Updated last week
- Framework for image and flow cytometry analysis☆32Updated last month
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 3 years ago
- MethodsJ2☆14Updated 3 years ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Updated 6 months ago
- A plugin for exporting RDF from OMERO☆15Updated 2 months ago
- Jupyter Notebooks for the Image Data Resource☆19Updated 2 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- ☆20Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆26Updated this week
- Curated metadata for all studies published in the Image Data Resource☆16Updated 6 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- An introduction to OME-Zarr for big bioimaging data☆24Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Updated 6 months ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Updated 3 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆38Updated 2 months ago
- A plugin to visualise 3D spatial single cell omics☆20Updated 3 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 4 months ago
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 9 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆20Updated 6 months ago
- A web-based, time-series visualizer for tracked segmented data.☆13Updated this week
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Updated 3 months ago