VolkerH / DaskFusionLinks
Fusing image tiles with dask array's map_blocks
☆30Updated last year
Alternatives and similar repositories for DaskFusion
Users that are interested in DaskFusion are comparing it to the libraries listed below
Sorting:
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 7 months ago
- ☆23Updated 4 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 2 months ago
- A 3D interactivity toolbox for napari☆37Updated 3 months ago
- Use Napari Viewer to display CZI images☆12Updated 3 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆81Updated this week
- python tools for BigDataViewer☆22Updated 10 months ago
- A napari plugin for zarr backed OME-NGFF images☆38Updated 2 weeks ago
- ilastik plugin for napari☆14Updated last month
- native Python dataclasses for the OME data model☆61Updated 2 weeks ago
- A minimal Python package for reading and validating OME-Zarr (meta)data☆35Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- ☆18Updated 2 weeks ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆40Updated last week
- Pydantic models for OME-NGFF☆24Updated last month
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago
- serve Zarr datasets via HTTP☆31Updated 2 years ago
- scalable multiscale image pyramids in python☆29Updated last year
- ImageJ convenience layer for N5☆17Updated 2 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆53Updated this week
- Create web-based OME-Zarr galleries☆21Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- 1d plotting in napari-based canvas.☆26Updated last week
- ☆51Updated this week
- Use ImageJ functionality from napari☆31Updated last month
- ☆14Updated last week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated 2 months ago