VolkerH / DaskFusion
Fusing image tiles with dask array's map_blocks
☆30Updated last year
Alternatives and similar repositories for DaskFusion:
Users that are interested in DaskFusion are comparing it to the libraries listed below
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated last month
- A minimal Python package for reading OME-Zarr (meta)data☆22Updated last week
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated 2 months ago
- python tools for BigDataViewer☆21Updated 2 months ago
- ilastik plugin for napari☆14Updated 10 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆19Updated 8 months ago
- ☆22Updated 3 years ago
- serve Zarr datasets via HTTP☆28Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- scalable multiscale image pyramids in python☆26Updated 7 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆59Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 6 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- ☆16Updated last week
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)☆9Updated 11 months ago
- ☆29Updated 11 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆13Updated 8 months ago
- ☆16Updated 2 years ago
- Pydantic models for OME-NGFF☆23Updated this week
- Illustrations created by Henning Falk for the Zarr community☆31Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆32Updated 3 weeks ago