kingsfordgroup / armatus
☆28Updated 7 years ago
Alternatives and similar repositories for armatus:
Users that are interested in armatus are comparing it to the libraries listed below
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆31Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆42Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- chia pet analysis software☆25Updated 6 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆68Updated 4 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Genomic Association Tester☆31Updated last year
- IDR☆31Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Package for analysis and characterization of differential TADs☆24Updated 3 years ago
- ☆20Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 2 months ago
- processing 10x genomics reads☆25Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43Updated 7 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- ☆56Updated 3 years ago
- ☆37Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆27Updated 10 months ago