Alternatives and similar repositories for yhaplo

Users that are interested in yhaplo are comparing it to the libraries listed below

• 23andMe / seqseek
  Easy access to human reference genome sequences
  ☆57Updated 2 years ago
• genid / Yleaf
  Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
  ☆29Updated 5 months ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆166Updated last year
• arq5x / poretools
  a toolkit for working with Oxford nanopore data
  ☆246Updated 2 years ago
• stevenliuyi / admix
  an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
  ☆68Updated 3 years ago
• dcjones / fastq-tools
  Small utilities for working with fastq sequence files.
  ☆124Updated 2 years ago
• ryanlayer / gqt
  A genotype query interface.
  ☆136Updated 4 years ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆99Updated 2 years ago
• arrogantrobot / 23andme2vcf
  convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf
  ☆98Updated 6 years ago
• verilylifesciences / genomewarp
  GenomeWarp translates genetic variants from one genome assembly version to another.
  ☆97Updated 2 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆74Updated 6 years ago
• DReichLab / AdmixTools
  Tools test whether admixture occurred and more
  ☆208Updated 11 months ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 4 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated last week
• Cibiv / NextGenMap
  NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…
  ☆87Updated 6 years ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• broadgsa / gatk-protected
  Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…
  ☆143Updated 7 years ago
• nh13 / DWGSIM
  Whole Genome Simulator for Next-Generation Sequencing
  ☆101Updated 8 months ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆95Updated 5 years ago
• richarddurbin / pbwt
  Implementation of Positional Burrows-Wheeler Transform for genetic data
  ☆110Updated 5 months ago
• jts / sga
  de novo sequence assembler using string graphs
  ☆241Updated 6 years ago
• marbl / metAMOS
  A metagenomic and isolate assembly and analysis pipeline built with AMOS
  ☆94Updated 7 years ago
• arq5x / bedtools
  A powerful toolset for genome arithmetic.
  ☆142Updated 4 years ago
• brentp / bio-playground
  miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
  ☆183Updated 6 years ago
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆95Updated 6 years ago
• mateidavid / nanocall
  An Oxford Nanopore Basecaller
  ☆71Updated 3 years ago
• Phelimb / BIGSI
  BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
  ☆126Updated 2 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• seppinho / haplogrep-cmd
  HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
  ☆76Updated 2 years ago