Alternatives and similar repositories for yhaplo:

Users that are interested in yhaplo are comparing it to the libraries listed below

• arrogantrobot / 23andme2vcf
  convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf
  ☆97Updated 5 years ago
• stevenliuyi / admix
  an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
  ☆62Updated 2 years ago
• 23andMe / seqseek
  Easy access to human reference genome sequences
  ☆56Updated last year
• DReichLab / AdmixTools
  Tools test whether admixture occurred and more
  ☆191Updated 6 months ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• armartin / ancestry_pipeline
  Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
  ☆108Updated 3 years ago
• genid / Yleaf
  Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
  ☆24Updated last week
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆156Updated 11 months ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• DReichLab / EIG
  Eigen tools by Nick Patterson and Alkes Price lab
  ☆183Updated last year
• ryanlayer / gqt
  A genotype query interface.
  ☆135Updated 4 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆73Updated 2 weeks ago
• counsyl / hgvs
  HGVS variant name parsing and generation
  ☆174Updated last year
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆122Updated 5 years ago
• seppinho / haplogrep-cmd
  HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
  ☆75Updated 2 years ago
• lh3 / minimap
  This repo is DEPRECATED. Please use minimap2, the successor of minimap.
  ☆105Updated 7 years ago
• dcjones / fastq-tools
  Small utilities for working with fastq sequence files.
  ☆118Updated 2 years ago
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 2 years ago
• Cibiv / NextGenMap
  NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…
  ☆87Updated 5 years ago
• nh13 / DWGSIM
  Whole Genome Simulator for Next-Generation Sequencing
  ☆96Updated 3 months ago
• marbl / metAMOS
  A metagenomic and isolate assembly and analysis pipeline built with AMOS
  ☆93Updated 7 years ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆87Updated last week
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• ENCODE-DCC / kentUtils
  UCSC command line bioinformatic utilities
  ☆177Updated 8 months ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆53Updated last week
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆196Updated 3 years ago
• poruloh / Eagle
  Haplotype phasing software
  ☆65Updated 4 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆194Updated last year
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆73Updated 5 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆96Updated 5 years ago