Alternatives and similar repositories for radmixture

Users that are interested in radmixture are comparing it to the libraries listed below

• slzhao / QC3
  QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
  ☆32Updated 9 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 3 years ago
• riverlee / MitoSeek
  Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
  ☆41Updated 6 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• Ettwiller / Damage-estimator
  Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…
  ☆54Updated 8 years ago
• xmao / kobas
  KOBAS: a command line tool for identifying significant pathways from genomic data
  ☆32Updated 15 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆37Updated 5 months ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆40Updated 8 years ago
• gatk-workflows / broad-prod-wgs-germline-snps-indels
  Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…
  ☆56Updated 5 years ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 5 years ago
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆19Updated 3 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆41Updated 4 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• ssadedin / bazam
  A read extraction and realignment tool for next generation sequencing data
  ☆103Updated 3 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆48Updated 8 months ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated last year
• lh3 / tabtk
  Toolkit for processing TAB-delimited format
  ☆62Updated last year
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆37Updated 2 years ago
• ALLBio / allbiotc2
  Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
  ☆24Updated 11 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated this week
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 6 months ago
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆32Updated 3 years ago
• najoshi / sabre
  ☆63Updated 4 years ago
• TGAC / 361Division
  361 Division - Scientific Training, Education and Learning
  ☆28Updated 5 years ago
• PhanstielLab / Sushi
  Tools for visualizing genomics data
  ☆69Updated 4 years ago