Command line tools for CMDB varaints browser
☆23May 14, 2024Updated 2 years ago
Alternatives and similar repositories for cmdbtools
Users that are interested in cmdbtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 3 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- Fast and scalable variant annotation tool☆30May 1, 2022Updated 4 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 5 months ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- ☆13Apr 5, 2024Updated 2 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 4 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.☆170Apr 18, 2022Updated 4 years ago
- Phenotype driven gene prioritization for HPO☆53Jul 26, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Somatic point mutation caller☆17Jul 8, 2016Updated 10 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆52Dec 27, 2023Updated 2 years ago
- CMOD Wikidata App built on Django Framework for editing Wikidata with existing GeneWIki bot code☆12Feb 3, 2017Updated 9 years ago
- Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomi…☆13Mar 1, 2016Updated 10 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Analysis of antibody NGS data☆13Mar 19, 2026Updated 4 months ago
- ☆15Sep 27, 2022Updated 3 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆14Apr 2, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multiplex Primer Design☆12May 3, 2020Updated 6 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 12 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 9, 2026Updated last month
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆120Oct 27, 2023Updated 2 years ago
- Genomics data visualization in Python by using matplotlib.☆70Jun 29, 2026Updated 3 weeks ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 8 months ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago
- Genomic VCF to tab-separated values☆49May 23, 2026Updated last month
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆115Mar 28, 2024Updated 2 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆16Apr 13, 2021Updated 5 years ago
- Note: tabix and bgzip binaries are now part of the HTSlib project.☆92Aug 3, 2021Updated 4 years ago