Command line tools for CMDB varaints browser
☆23May 14, 2024Updated last year
Alternatives and similar repositories for cmdbtools
Users that are interested in cmdbtools are comparing it to the libraries listed below
Sorting:
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 3 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 8 years ago
- ☆13Apr 5, 2024Updated last year
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Aug 16, 2023Updated 2 years ago
- Analysis of antibody NGS data☆13May 17, 2022Updated 3 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Jun 9, 2021Updated 4 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated last year
- Fast and scalable variant annotation tool☆30May 1, 2022Updated 3 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- Exome Copy Number Variation Polisher via Deep Learning☆18Jun 1, 2020Updated 5 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 2 years ago
- Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomi…☆13Mar 1, 2016Updated 10 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆20Mar 5, 2024Updated last year
- Genomics data visualization in Python by using matplotlib.☆69Dec 27, 2023Updated 2 years ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Feb 18, 2026Updated last week
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆114Mar 28, 2024Updated last year
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- Expanded STR algorithm for Illumina sequencing data☆23Sep 11, 2022Updated 3 years ago
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆119Oct 27, 2023Updated 2 years ago
- dbSNP☆143Jun 21, 2024Updated last year
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Oct 27, 2023Updated 2 years ago