ShujiaHuang / cmdbtoolsLinks
Command line tools for CMDB varaints browser
☆23Updated last year
Alternatives and similar repositories for cmdbtools
Users that are interested in cmdbtools are comparing it to the libraries listed below
Sorting:
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Updated 6 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection☆29Updated 5 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Draw Circos in Python☆31Updated 3 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- fastx-utils using klib☆20Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Somatic point mutation caller☆17Updated 9 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- ☆46Updated 8 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Updated 3 years ago
- BIC@MSKCC Variants Pipeline☆23Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Updated 2 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Updated 6 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- DNA copy number detection from off-target sequence data☆33Updated 7 years ago