Alternatives and similar repositories for cmdbtools

Users that are interested in cmdbtools are comparing it to the libraries listed below

• aradenbaugh / radia
  RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection
  ☆29Updated 5 years ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆64Updated last year
• bjtrost / TCAG-WGS-CNV-workflow
  Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods
  ☆46Updated 3 years ago
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆29Updated 4 years ago
• hliang / cnv-seq
  cnv-seq with custom bugfix
  ☆10Updated 12 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆51Updated 6 years ago
• jasminezhoulab / CancerLocator
  A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.
  ☆15Updated 6 years ago
• ChrisMaherLab / INTEGRATE-Neo
  ☆19Updated 7 years ago
• PeeperLab / CopywriteR
  DNA copy number detection from off-target sequence data
  ☆32Updated 7 years ago
• fanyucai1 / TMB
  肿瘤突变负荷学习笔记（tumor mutation burden）
  ☆16Updated 5 years ago
• danielfan / MuSE
  Somatic point mutation caller
  ☆17Updated 9 years ago
• sfu-compbio / sinvict
  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
  ☆27Updated 5 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated last month
• soccin / BIC-variants_pipeline
  BIC@MSKCC Variants Pipeline
  ☆24Updated 2 years ago
• qiukunlong / seeksv
  A bioinformatics tool for SV detection and virus integration discovery
  ☆21Updated 8 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• kunstner / freec2gistic
  Workflow: Convert CONTROL-freec output to GISTIC2
  ☆10Updated 4 years ago
• pughlab / ConsensusCruncher
  ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…
  ☆21Updated 3 years ago
• gxiaolab / mountainClimber
  ☆20Updated 6 years ago
• tsznxx / PyCircos
  Draw Circos in Python
  ☆31Updated 3 years ago
• rhshah / iCallSV
  A Framework to call Structural Variants from NGS based datasets
  ☆22Updated 7 years ago
• broadinstitute / oncotator
  ☆69Updated 3 years ago
• mikessh / mageri
  MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
  ☆21Updated 8 years ago
• ndbrown6 / MSK-GRAIL-TECHVAL
  High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
  ☆22Updated 5 years ago
• WGLab / phenolyzer
  phenotype-based prioritization of candidate genes for human diseases
  ☆65Updated 2 years ago
• oicr-gsi / debarcer
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Updated 4 years ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆28Updated last year
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆29Updated 4 years ago
• jason-weirather / hla-polysolver
  Fork of the Polysolver project
  ☆33Updated 5 years ago
• lulab / exSEEK
  exRNA Biomarker Discovery for Liquid Biopsy
  ☆13Updated 4 years ago