tkrahn / extract23Links
Extract a simulated 23andMe (V3) style file from a Whole Genome BAM file
☆35Updated 10 months ago
Alternatives and similar repositories for extract23
Users that are interested in extract23 are comparing it to the libraries listed below
Sorting:
- tools for reading, writing, generating, merging, and remapping SNPs☆113Updated last week
- GenomeTools genome analysis system.☆334Updated 2 months ago
- Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men☆122Updated this week
- Easy access to human reference genome sequences☆58Updated 2 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆294Updated 3 months ago
- NGS Language Bindings☆120Updated 2 years ago
- FASTA/FASTQ pre-processing programs☆197Updated 3 years ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆844Updated last month
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆172Updated this week
- A curated list of awesome personal genomics software, libraries, and educational resources.☆146Updated last year
- a lightweight db framework for exploring genetic variation.☆323Updated 5 years ago
- Validation suite for Variant Call Format (VCF) files, implemented using C++11☆137Updated 6 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆352Updated 6 months ago
- JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.☆473Updated 2 weeks ago
- GFF and GTF file manipulation and interconversion☆314Updated 2 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆530Updated this week
- Utilities for building and managing bioconda recipes☆103Updated last month
- Spliced read mapper for RNA-Seq☆92Updated 2 years ago
- Core BioPerl 1.x code☆315Updated 5 months ago
- Browser for ExAC consortium data☆106Updated 4 years ago
- UCSC Genome Browser source. "beta" is released version / "master" is testing.☆254Updated this week
- A secure encryption tool for genomic data☆62Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆174Updated last year
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆550Updated 8 months ago
- Fast genome analysis from unassembled short reads☆309Updated last year
- BEDOPS: high-performance genomic feature operations☆359Updated 9 months ago
- GFF and GVF specification documents☆219Updated last year
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆145Updated 6 months ago
- tools for analyzing and exploring genetic relationships☆173Updated last week
- Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures☆127Updated 3 years ago