tkrahn / extract23Links
Extract a simulated 23andMe (V3) style file from a Whole Genome BAM file
☆32Updated 7 months ago
Alternatives and similar repositories for extract23
Users that are interested in extract23 are comparing it to the libraries listed below
Sorting:
- Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men☆111Updated 3 weeks ago
- Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data☆29Updated 7 months ago
- GenomeTools genome analysis system.☆325Updated 3 weeks ago
- NGS Language Bindings☆119Updated last year
- Easy access to human reference genome sequences☆56Updated 2 years ago
- Free mtDNA Haplogroup Classification Service☆29Updated 4 months ago
- ☆50Updated 5 months ago
- an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.☆71Updated 3 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 8 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated 3 weeks ago
- SRAToolkit has been REPLACED - see README☆37Updated 9 years ago
- FASTA/FASTQ pre-processing programs☆191Updated 3 years ago
- Utilities for building and managing bioconda recipes☆103Updated 2 weeks ago
- reference-guided aligner for next-generation sequencing technologies☆57Updated 9 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- tools for reading, writing, merging, and remapping SNPs☆109Updated 7 months ago
- ☆91Updated 3 years ago
- CloudBioLinux: configure virtual (or real) machines with tools for biological analyses☆257Updated last year
- GFF and GVF specification documents☆216Updated last year
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- Tools test whether admixture occurred and more☆210Updated last year
- The nimble & robust variant annotator☆185Updated last year
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆171Updated last month
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆123Updated 2 years ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆139Updated last week
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆182Updated last year
- de novo sequence assembler using string graphs☆240Updated 6 years ago
- Assemble large genomes using short reads☆326Updated 7 months ago
- Validation suite for Variant Call Format (VCF) files, implemented using C++11☆137Updated 3 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆340Updated 3 months ago