Alternatives and similar repositories for seqseek:

Users that are interested in seqseek are comparing it to the libraries listed below

• 23andMe / yhaplo
  Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
  ☆110Updated 2 months ago
• arrogantrobot / 23andme2vcf
  convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf
  ☆97Updated 5 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆62Updated 8 years ago
• lucapinello / CRISPResso
  Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
  ☆135Updated 5 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• brentp / peddy
  genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
  ☆137Updated 3 years ago
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆91Updated this week
• ncbi / magicblast
  ☆36Updated last week
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 7 years ago
• plantimals / 2vcf
  convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
  ☆56Updated 5 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• joshuagryphon / plastid
  Position-wise analysis of sequencing and genomics data
  ☆39Updated last year
• counsyl / hgvs
  HGVS variant name parsing and generation
  ☆174Updated last year
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆187Updated last week
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆82Updated last week
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆129Updated 2 months ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 7 years ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆95Updated 2 years ago
• Illumina / canvas
  Canvas - Copy number variant (CNV) calling from DNA sequencing data
  ☆127Updated 5 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 9 months ago
• Illumina / Cyrius
  A tool to genotype CYP2D6 with WGS data
  ☆51Updated last year
• genome / genome
  Core modules used by the GMS
  ☆65Updated last year