intel-mic / bwa-aln-xeon-phi-0.5.10
bwa-aln-xeon-phi optimizes bwa aln performance on both Xeon and Xeon Phi platform, and support symmetric running model on Xeon and Xeon Phi hybrid nodes.
☆17Updated 10 years ago
Related projects ⓘ
Alternatives and complementary repositories for bwa-aln-xeon-phi-0.5.10
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆38Updated 7 years ago
- Assembly Based ReAligner☆71Updated 6 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- ☆24Updated 7 years ago
- Tools for bam file processing☆55Updated 9 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Aligner for sequencing data☆21Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- ☆37Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated 10 months ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Compressive Read-mapping Accelerator☆13Updated 8 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Browser based application for viewing bam alignments☆56Updated 7 years ago
- gvcf aggregation tool☆12Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- ☆49Updated last year