A fast and memory efficient hashmap using sorting to resolve collisions
☆43Nov 16, 2020Updated 5 years ago
Alternatives and similar repositories for patchmap
Users that are interested in patchmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Dec 9, 2022Updated 3 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Some near drop in stl compatible hash tables that are a lot more space efficient than any other options.☆24Sep 16, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆37Updated this week
- A tool for merging large BWTs☆23Nov 26, 2020Updated 5 years ago
- Towards Optimal-Space Minimal Perfect Hashing Beyond Brute-Force☆15Mar 31, 2025Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- My very own vxsort re-implemented with "modern" C++ by a complete idiot (in C++)☆33Jun 12, 2026Updated 3 months ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- An Evaluation of Linear Probing Hashtable Algorithms☆40Nov 27, 2023Updated 2 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Aug 28, 2019Updated 7 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Aug 28, 2026Updated 3 weeks ago
- This is an example of a boolean expression editor made in Dear ImGui☆15Dec 3, 2022Updated 3 years ago
- GBWT-based handle graph☆35Aug 19, 2026Updated 3 weeks ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- TU DOrtmund lossless COMPression framework☆20Sep 7, 2024Updated 2 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Aug 2, 2025Updated last year
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- Lockless allocator, derived from http://locklessinc.com/☆14May 18, 2017Updated 9 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago
- ☆10Jun 16, 2022Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Sep 9, 2026Updated last week
- fast prime sieve and hash algorithm☆40Aug 31, 2025Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Murmur3 hash in Go☆13Dec 15, 2017Updated 8 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- (Legacy) Extremely fast unordered map and set library for C++20☆11Sep 17, 2023Updated 3 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 3 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Dec 9, 2024Updated last year
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 7 years ago