albertozeni / LOGANLinks
LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.
☆29Updated 2 years ago
Alternatives and similar repositories for LOGAN
Users that are interested in LOGAN are comparing it to the libraries listed below
Sorting:
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 6 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆49Updated 3 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆35Updated 2 months ago
- Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly☆17Updated last year
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 8 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆20Updated last month
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- High Performance Sorting Based Distributed memory K-mer counter☆14Updated last month
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 5 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆72Updated 2 years ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆37Updated 2 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆57Updated last week
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- generating hardware accelerators for pangenomic graph queries☆38Updated 2 weeks ago
- Benchmarking pairwise aligners☆36Updated 5 months ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆11Updated last year
- Efficient, parallel compression for terabyte-scale data☆47Updated 2 months ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆12Updated 2 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Updated 8 years ago
- Global alignment and alignment extension☆133Updated 2 years ago
- slow5lib is a software library for reading & writing SLOW5 files.☆46Updated last week
- Self-contained, multi-threaded fasta/q parser☆45Updated 9 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆51Updated 3 weeks ago