Alternatives and similar repositories for BoolODE:

Users that are interested in BoolODE are comparing it to the libraries listed below

• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆59Updated 10 months ago
• Genentech / sVAE
  ☆58Updated last year
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 7 months ago
• YosefLab / SymSim
  ☆24Updated 5 months ago
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆74Updated last year
• klarman-cell-observatory / scPhere
  ☆98Updated last year
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆16Updated last week
• caokai1073 / Pamona
  The software of Pamona, a partial manifold alignment algorithm.
  ☆19Updated 4 years ago
• altoslabs / perturbench
  ☆23Updated 2 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆67Updated 2 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated last year
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆105Updated 5 months ago
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆29Updated this week
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago
• vandijklab / CINEMA-OT
  ☆30Updated 4 months ago
• YosefLab / totalVI_reproducibility
  ☆16Updated 2 years ago
• HantaoShu / DeepSEM
  ☆73Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 6 months ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 2 years ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆56Updated 6 years ago
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆69Updated last year
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆26Updated 3 years ago
• ChengF-Lab / autoCell
  ☆14Updated 2 years ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆53Updated last year
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆19Updated last year