Murali-group / BoolODELinks
Git Repo for simulating Boolean Models
☆35Updated last year
Alternatives and similar repositories for BoolODE
Users that are interested in BoolODE are comparing it to the libraries listed below
Sorting:
- A simulator for single-cell expression data guided by gene regulatory networks☆63Updated last year
- ☆63Updated last year
- Global Waddington-OT☆23Updated 3 months ago
- ☆48Updated 6 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆54Updated last year
- Quantifying experimental perturbations at single cell resolution☆109Updated 9 months ago
- Functional and Learnable Cell dynamicS☆17Updated 2 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 years ago
- A software package for analyzing snapshots of developmental processes☆146Updated 2 years ago
- ☆100Updated 2 years ago
- Simulating single-cell data using gene regulatory networks 📠☆74Updated last year
- ☆26Updated 9 months ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- ☆82Updated 2 years ago
- ☆28Updated last month
- Simple scVI implementation☆12Updated 3 weeks ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆191Updated 2 weeks ago
- Models and datasets for perturbational single-cell omics☆153Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆39Updated 2 years ago
- ☆23Updated last week
- covolutional neural network based coexpression analysis☆78Updated 5 years ago
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 6 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆45Updated 2 years ago
- ☆33Updated 2 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year