Murali-group / BoolODELinks
Git Repo for simulating Boolean Models
☆35Updated last year
Alternatives and similar repositories for BoolODE
Users that are interested in BoolODE are comparing it to the libraries listed below
Sorting:
- A simulator for single-cell expression data guided by gene regulatory networks☆63Updated last year
- ☆63Updated 2 years ago
- Global Waddington-OT☆24Updated 6 months ago
- Simulating single-cell data using gene regulatory networks 📠☆75Updated last year
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- A software package for analyzing snapshots of developmental processes☆146Updated 3 years ago
- ☆48Updated 6 years ago
- ☆102Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last week
- Functional and Learnable Cell dynamicS☆18Updated 4 months ago
- ☆26Updated last year
- spatial transcriptome, single cell☆70Updated 2 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆55Updated 2 years ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆194Updated 3 months ago
- Simple scVI implementation☆12Updated last week
- Models and datasets for perturbational single-cell omics☆163Updated 3 years ago
- ☆85Updated 2 years ago
- ☆34Updated 5 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Deep Generative Modeling of RNA Velocity☆35Updated 5 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 9 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆76Updated last year
- ☆45Updated 2 months ago
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Updated last year
- Multi-omic single-cell optimal transport tools☆174Updated last week
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- ☆54Updated 2 months ago