Git Repo for simulating Boolean Models
☆39Nov 7, 2025Updated 5 months ago
Alternatives and similar repositories for BoolODE
Users that are interested in BoolODE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BEELINE: evaluation of algorithms for gene regulatory network inference☆207Apr 7, 2026Updated 3 weeks ago
- A simulator for single-cell expression data guided by gene regulatory networks☆78May 8, 2024Updated last year
- Project bulk/single-cell RNA-seq data to given LSI space☆11Jan 17, 2022Updated 4 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated this week
- Regulatory networks with Direct Information☆18Oct 14, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆20May 14, 2020Updated 5 years ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 5 months ago
- ☆62Jun 11, 2025Updated 10 months ago
- DynGFN: Bayesian Dynamic Causal Discovery using Generative Flow Networks☆60Sep 17, 2025Updated 7 months ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated last year
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆18Jun 15, 2025Updated 10 months ago
- ☆38Mar 30, 2026Updated last month
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- A fast and robust Bayesian nonparametric method for prediction of complex traits using GWAS summary statistics☆13May 24, 2025Updated 11 months ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Repository for "Differentiable Causal Discovery from Interventional Data"☆78Jan 31, 2022Updated 4 years ago
- ☆42Jan 27, 2026Updated 3 months ago
- Python Library for interaction with US NLM Daily Med API☆12Feb 9, 2017Updated 9 years ago
- ☆12Jan 8, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆38Apr 16, 2025Updated last year
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆40Jul 28, 2025Updated 9 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆185Sep 7, 2023Updated 2 years ago
- An implementation of ESM2 in Equinox+JAX☆36Apr 20, 2026Updated 2 weeks ago
- Code for Neural Relational Inference with Efficient Message Passing Mechanisms (AAAI 2021).☆20May 9, 2021Updated 4 years ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- Tabula Muris Senis☆109Jun 5, 2023Updated 2 years ago
- ☆12Aug 29, 2024Updated last year
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CellNet, for cancer☆10Jul 14, 2022Updated 3 years ago
- pytorch dataloaders for single-cell perturbation data☆44Apr 24, 2026Updated last week
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆439Updated this week
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆29Mar 2, 2020Updated 6 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago