SydneyBioX / scFeaturesLinks
☆13Updated 3 months ago
Alternatives and similar repositories for scFeatures
Users that are interested in scFeatures are comparing it to the libraries listed below
Sorting:
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 3 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated 4 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 weeks ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated this week
- ☆57Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- ☆41Updated last month
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- R API and htmlwidget for Vitessce☆42Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Querying cellular states and programs by learning representations of gene sets☆14Updated last year
- ☆20Updated last month
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- ☆29Updated 3 years ago
- ☆29Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆19Updated last month
- Hierarchical classification of cells☆25Updated last year
- An R package for visualising cell-cell interactions☆43Updated last year
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated this week
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago