bharani-lab / WES-Benchmarking-Pipeline_ManojLinks
Benchmarking of aligners and variant callers for Whole Exome Sequencing data
☆19Updated 6 years ago
Alternatives and similar repositories for WES-Benchmarking-Pipeline_Manoj
Users that are interested in WES-Benchmarking-Pipeline_Manoj are comparing it to the libraries listed below
Sorting:
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆23Updated last month
- A small-RNA sequencing analysis pipeline☆89Updated 2 months ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- A networks analysis pipeline for RNASeq time series data☆14Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- RNA-seq workflow for Snakemake based on STAR and featureCounts.☆21Updated 6 years ago
- ☆50Updated 4 years ago
- Precision HLA typing from next-generation sequencing data☆70Updated last week
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆44Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.☆15Updated 10 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 2 weeks ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Updated 2 weeks ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆71Updated 4 months ago
- visual analysis of your VCF files☆36Updated 2 years ago
- An interactive web-tool for RNA-seq analysis☆68Updated 5 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆32Updated 2 months ago
- A list of alternative splicing analysis resources☆45Updated 4 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 8 months ago
- ☆13Updated 4 years ago
- ☆32Updated 2 months ago
- ☆11Updated 6 years ago