Alternatives and similar repositories for WES-Benchmarking-Pipeline_Manoj:

Users that are interested in WES-Benchmarking-Pipeline_Manoj are comparing it to the libraries listed below

• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆45Updated 3 weeks ago
• gatk-workflows / gatk4-exome-analysis-pipeline
  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…
  ☆52Updated 4 years ago
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆41Updated 9 years ago
• Jeltje / varscan2
  Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2
  ☆29Updated 7 years ago
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆50Updated 8 months ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆68Updated 7 months ago
• bioinformatics-IBCH / Comparison-study-of-germline-CNV-calling-tools
  ☆16Updated 3 years ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• pughlab / ConsensusCruncher
  ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…
  ☆21Updated 2 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆46Updated last week
• patidarr / ngs_pipeline
  Exome/Capture/RNASeq Pipeline Implementation using snakemake
  ☆45Updated 7 years ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆62Updated last year
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated 2 years ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆35Updated last year
• zd1 / telseq
  A software for calculating telomere length
  ☆68Updated 6 years ago
• smithlabcode / dnmtools
  Tools for analyzing DNA methylation data
  ☆40Updated 2 months ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 2 years ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆21Updated 11 months ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆62Updated 9 months ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆48Updated 4 years ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆25Updated 2 years ago
• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆22Updated last year
• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆53Updated 4 years ago
• BioinfoUNIBA / REDItools2
  ☆56Updated 3 years ago
• bioinfo-pf-curie / TMB
  Tumor Mutational Burden
  ☆58Updated 7 months ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆32Updated 2 years ago
• gavinha / TitanCNA
  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
  ☆97Updated 4 years ago
• FoundationMedicineInc / SGZ
  ☆41Updated last year
• nf-core / hlatyping
  Precision HLA typing from next-generation sequencing data
  ☆66Updated last week
• nf-core / dualrnaseq
  Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
  ☆22Updated this week