dieterich-lab / DCCLinks
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
☆37Updated 3 years ago
Alternatives and similar repositories for DCC
Users that are interested in DCC are comparing it to the libraries listed below
Sorting:
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- ☆72Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆84Updated 11 months ago
- Demultiplexes a fastq.☆48Updated 5 years ago
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- ☆39Updated 4 years ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- ☆32Updated 7 years ago
- RNA editing quantification in deep transcriptome data☆16Updated 6 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- ☆49Updated 3 years ago
- ☆60Updated 6 months ago
- Tools for analyzing DNA methylation data☆44Updated last week
- Publication quality NGS track plotting☆117Updated 3 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- ☆43Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago