DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
☆38Aug 4, 2022Updated 3 years ago
Alternatives and similar repositories for DCC
Users that are interested in DCC are comparing it to the libraries listed below
Sorting:
- tools to find circRNAs in RNA-seq data☆45Nov 16, 2017Updated 8 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Aug 14, 2018Updated 7 years ago
- circular RNA analysis toolset☆89Sep 8, 2024Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts☆18Aug 14, 2025Updated 6 months ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 8 years ago
- Circular RNA Identification for Nanopore Sequencing☆22May 23, 2024Updated last year
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Paired-seq☆15Jul 17, 2024Updated last year
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Feb 15, 2022Updated 4 years ago
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- ☆18May 31, 2024Updated last year
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 5 months ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- IRESfinder is a python package for the identification of RNA internal ribosome entry site in eukaryotic cell☆20Aug 27, 2021Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆31Dec 28, 2017Updated 8 years ago
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Jul 20, 2024Updated last year
- ATAC-seq snakemake pipeline☆88Feb 13, 2020Updated 6 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 6 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆10Apr 8, 2025Updated 10 months ago
- ☆14Dec 15, 2019Updated 6 years ago
- Data Processing Kitchen Sink for proteomics data☆13Jan 13, 2026Updated last month
- ☆13Apr 22, 2021Updated 4 years ago
- Estimate PTM hotspots in protein sequence alignments☆14Feb 6, 2019Updated 7 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago