UofLBioinformatics / circDeepLinks
End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning
☆24Updated 5 years ago
Alternatives and similar repositories for circDeep
Users that are interested in circDeep are comparing it to the libraries listed below
Sorting:
- ☆19Updated 4 years ago
- ☆22Updated 5 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 5 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated 11 months ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 4 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 6 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- ☆55Updated 5 years ago
- ☆19Updated 4 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- MVP (Qi et al 2021) source code☆16Updated 4 years ago
- covolutional neural network based coexpression analysis☆78Updated 5 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆79Updated 3 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆23Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- MHC class II binding prediction☆14Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Source code for integrative nonnegative matrix factorization☆19Updated 6 years ago
- DeepCC: a novel deep learning-based framework for cancer molecular subtype classification☆19Updated 3 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last month
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago