UofLBioinformatics / circDeep
End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning
☆23Updated 5 years ago
Alternatives and similar repositories for circDeep:
Users that are interested in circDeep are comparing it to the libraries listed below
- ☆19Updated 4 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated last year
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- ☆10Updated 4 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 6 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated 10 months ago
- ☆23Updated 5 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- ☆55Updated 5 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 6 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆44Updated last year
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆78Updated 3 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆25Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- ☆19Updated 4 years ago
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Updated 7 years ago
- Pathway-based sparse deep neural network☆16Updated 4 years ago
- ☆19Updated 4 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆65Updated 4 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 5 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆22Updated 7 years ago