cbg-ethz / pancancer-clusteringView external linksLinks
Bayesian network modelling of mutational interactions identifies novel cancer subgroups
☆15May 10, 2021Updated 4 years ago
Alternatives and similar repositories for pancancer-clustering
Users that are interested in pancancer-clustering are comparing it to the libraries listed below
Sorting:
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- Immune response signatures in cancer☆12May 22, 2019Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Feb 15, 2022Updated 4 years ago
- FOR my learing☆12Feb 4, 2026Updated last week
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Software and analysis of metabolism studies across multiple cancer types☆10Sep 5, 2017Updated 8 years ago
- bioinformatics R test code☆14Feb 1, 2026Updated 2 weeks ago
- 单细胞转录组实战☆14Jul 9, 2019Updated 6 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- ☆16Mar 2, 2023Updated 2 years ago
- ☆17Mar 6, 2024Updated last year
- ☆13Feb 19, 2021Updated 4 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Jan 5, 2020Updated 6 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Oct 29, 2024Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 5 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- Openbiox 翻 译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 5 years ago
- Causal mediation analysis in R☆31Dec 12, 2020Updated 5 years ago
- Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"☆30Mar 15, 2025Updated 11 months ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Aug 13, 2017Updated 8 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Mar 31, 2022Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- ☆32Feb 26, 2025Updated 11 months ago
- Path algorithm for generalized lasso problems☆34Dec 8, 2022Updated 3 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆146Jul 19, 2021Updated 4 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆32Jul 18, 2025Updated 6 months ago
- ☆35Jan 23, 2024Updated 2 years ago
- Deep-Learning framework for multi-omic and survival data integration☆87Dec 20, 2023Updated 2 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 10 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- ☆32Dec 6, 2017Updated 8 years ago