Alternatives and similar repositories for RcppML

Users that are interested in RcppML are comparing it to the libraries listed below

• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆80Updated 2 months ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆80Updated last year
• SaskiaFreytag / schex
  ☆74Updated last year
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 2 months ago
• NightingaleHealth / ggforestplot
  An R package to create forestplots of measures of effects with their confidence intervals.
  ☆63Updated 4 years ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆53Updated 5 months ago
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆67Updated this week
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆159Updated this week
• willtownes / glmpca
  ☆95Updated last year
• lucylgao / clusterpval
  ☆17Updated 2 years ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆28Updated 3 weeks ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆36Updated 8 months ago
• pwwang / plotthis
  plotthis is an R package that is built upon ggplot2 and other plotting packages.
  ☆68Updated last week
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆82Updated last month
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated 10 months ago
• const-ae / glmGamPoi
  Fit Gamma-Poisson Generalized Linear Models Reliably
  ☆115Updated 6 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆66Updated last month
• lazappi / clustree
  Visualise Clusterings at Different Resolutions
  ☆238Updated 2 months ago
• VPetukhov / ggrastr
  Raster geoms for ggplot2
  ☆225Updated 2 years ago
• drighelli / SpatialExperiment
  ☆70Updated 3 months ago
• SingleR-inc / SingleRBook-base
  See https://github.com/LTLA/SingleRBook for the latest version of this content.
  ☆11Updated 3 years ago
• renozao / NMF
  NMF: A Flexible R package for Nonnegative Matrix Factorization
  ☆151Updated 2 years ago
• YuLab-SMU / ggbreak
  An implementation of scale functions for setting axis breaks of a 'gg' plot.
  ☆141Updated 3 weeks ago
• neurogenomics / rworkflows
  Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
  ☆81Updated 3 weeks ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated last month
• RGLab / flowWorkspace
  flowWorkspace
  ☆45Updated 6 months ago
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆38Updated 6 years ago
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆53Updated 4 years ago
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year