ytchen0323 / cloud-scale-bwamemLinks
☆15Updated 8 years ago
Alternatives and similar repositories for cloud-scale-bwamem
Users that are interested in cloud-scale-bwamem are comparing it to the libraries listed below
Sorting:
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- Accelerated kernel library for genomics☆109Updated 4 months ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- Java Bindings (JNI) for bwa☆20Updated 8 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆33Updated last year
- The Platinum Genomes Truthset☆89Updated 8 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 7 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- GenomicsDB☆110Updated 2 years ago
- Parallel read alignment and variant calling using MapReduce☆18Updated 6 years ago
- Global alignment and alignment extension☆139Updated 2 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 8 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 3 years ago
- ☆82Updated 6 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆72Updated 2 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 2 months ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 4 years ago
- For original Nature Biotechnology Publication (Q1 2012)☆25Updated 8 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 8 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated this week
- Assembly Based ReAligner☆74Updated 7 years ago
- ☆11Updated 5 years ago
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 3 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago