☆15Feb 25, 2017Updated 9 years ago
Alternatives and similar repositories for cloud-scale-bwamem
Users that are interested in cloud-scale-bwamem are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Java Bindings (JNI) for bwa☆20Dec 15, 2016Updated 9 years ago
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- Falcon Accelerated Genomics Pipelines☆15Oct 1, 2019Updated 6 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆70Sep 5, 2019Updated 6 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Jul 12, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Miscellaneous functionality for manipulating Apache Spark RDDs.☆22Dec 29, 2018Updated 7 years ago
- ☆20Sep 22, 2015Updated 10 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆26Jan 31, 2017Updated 9 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- Smith-Waterman Acceleration on Intel’s FPGA with OpenCL for Long DNA Sequences☆19Jan 25, 2019Updated 7 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆73Dec 2, 2022Updated 3 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 8 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Aug 16, 2017Updated 8 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70May 20, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 7 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- OLD REPOSITORY - Go to☆31Feb 6, 2018Updated 8 years ago
- Facade for the codemirror☆10Jul 15, 2017Updated 9 years ago
- ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…☆1,056Mar 17, 2026Updated 4 months ago
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Parboiled2 based Parser for the W3C RDF 1.1 TriG-, Turtle-, N-Triples- and Quad-Languages for Scala, Java and JavaScript☆10Sep 5, 2017Updated 8 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 6 years ago
- http://a-terada.github.com/lamp/☆14Jul 14, 2023Updated 3 years ago
- Provides various cryptographic functions for scala.☆13Mar 7, 2019Updated 7 years ago
- ☆20Mar 31, 2021Updated 5 years ago
- Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, bi…☆13Dec 21, 2017Updated 8 years ago
- 2016 Example repository for creating website graphs with c3.js from CSV files.☆12Oct 6, 2020Updated 5 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 17, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- ☆13Aug 1, 2024Updated last year
- New Harvest in-incubator perfusion system for cellular agriculture and biomedical engineering☆14Oct 23, 2024Updated last year
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 8 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Aug 17, 2020Updated 5 years ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Updated this week
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago