ytchen0323 / cloud-scale-bwamem
☆15Updated 7 years ago
Alternatives and similar repositories for cloud-scale-bwamem:
Users that are interested in cloud-scale-bwamem are comparing it to the libraries listed below
- Java Bindings (JNI) for bwa☆19Updated 8 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- The Platinum Genomes Truthset☆85Updated 7 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 4 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆38Updated 7 years ago
- Aligner for sequencing data☆21Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- scripts to parse IrysView output☆39Updated 9 years ago
- Assembly Based ReAligner☆72Updated 6 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆69Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Assemblies from HPP Year 1 production☆71Updated last year
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆33Updated 2 months ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 2 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 7 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 5 months ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆43Updated 3 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Accelerated kernel library for genomics☆105Updated 5 months ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- NEAT read simulation tools☆97Updated 2 years ago
- Tools for early stage alignment file processing☆93Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ☆82Updated 6 years ago
- ☆30Updated 8 years ago
- CNV screening and annotation tool☆24Updated 8 years ago