ytchen0323 / cloud-scale-bwamemLinks
☆15Updated 8 years ago
Alternatives and similar repositories for cloud-scale-bwamem
Users that are interested in cloud-scale-bwamem are comparing it to the libraries listed below
Sorting:
- Accelerated kernel library for genomics☆109Updated 6 months ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- Java Bindings (JNI) for bwa☆20Updated 9 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated last year
- Parallel read alignment and variant calling using MapReduce☆18Updated 6 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 5 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆145Updated 7 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- The Platinum Genomes Truthset☆90Updated 8 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 9 years ago
- Global alignment and alignment extension☆141Updated 2 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆72Updated 3 years ago
- GenomicsDB☆109Updated 3 years ago
- ☆81Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 6 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 8 years ago
- ☆11Updated 5 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 3 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆297Updated 4 months ago
- Aligner for sequencing data☆21Updated 9 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 4 years ago
- Fast and memory-efficient sequencing error corrector☆94Updated 3 weeks ago
- Whole Genome Simulator for Next-Generation Sequencing☆102Updated last month
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated 2 years ago
- High performance data storage for importing, querying and transforming variants.☆99Updated 8 months ago
- BWT-based index for graphs☆73Updated 10 months ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆176Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- For original Nature Biotechnology Publication (Q1 2012)☆26Updated 8 years ago