ytchen0323 / cloud-scale-bwamemLinks
☆15Updated 8 years ago
Alternatives and similar repositories for cloud-scale-bwamem
Users that are interested in cloud-scale-bwamem are comparing it to the libraries listed below
Sorting:
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- Accelerated kernel library for genomics☆108Updated 2 months ago
- Java Bindings (JNI) for bwa☆20Updated 8 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 10 months ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆72Updated 2 years ago
- The Platinum Genomes Truthset☆88Updated 7 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 5 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 7 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 8 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- ☆82Updated 6 years ago
- Global alignment and alignment extension☆134Updated 2 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 3 years ago
- GenomicsDB☆110Updated 2 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- ☆11Updated 5 years ago
- ☆30Updated 8 years ago
- Parallel read alignment and variant calling using MapReduce☆19Updated 6 years ago
- For original Nature Biotechnology Publication (Q1 2012)☆25Updated 8 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 9 months ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 3 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆204Updated 4 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago