RWilton / Arioc
Arioc: GPU-accelerated DNA short-read alignment
☆69Updated 2 months ago
Alternatives and similar repositories for Arioc:
Users that are interested in Arioc are comparing it to the libraries listed below
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- small RNA analysis from NGS data☆37Updated 6 months ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Updated 3 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- TIDDIT - structural variant calling☆74Updated 2 weeks ago
- Quality of life improvements for Bioinformatics in Python.☆27Updated last week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆106Updated 9 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆70Updated 4 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆82Updated last month
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Maximum likelihood demultiplexing☆46Updated last month
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- (WIP) best-practices workflow for rare disease☆60Updated 8 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year