RWilton / AriocLinks
Arioc: GPU-accelerated DNA short-read alignment
☆70Updated last month
Alternatives and similar repositories for Arioc
Users that are interested in Arioc are comparing it to the libraries listed below
Sorting:
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- RUFUS k-mer based genomic variant detection☆54Updated 6 months ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆70Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Master of Pores 2☆23Updated 7 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆44Updated 7 months ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 4 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Data from the Human PanGenomics Project☆60Updated 4 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- The script presents a simple way to visualize features on human chromosome ideograms☆42Updated 2 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- Generic human DNA variant annotation pipeline☆58Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆59Updated last week
- SV detection from paired end reads mapping☆38Updated 14 years ago
- gatk4 RNA variant calling pipeline☆50Updated last week
- Kourami: Graph-guided assembly for HLA alleles☆39Updated 6 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated last week
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago