aidenlab / JuiceboxLegacyLinks
OLD REPOSITORY - Go to
☆31Updated 7 years ago
Alternatives and similar repositories for JuiceboxLegacy
Users that are interested in JuiceboxLegacy are comparing it to the libraries listed below
Sorting:
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆27Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- IDR☆31Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated last month
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- ☆39Updated 9 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Repository for the Anczukow-Lab splicing pipeline☆16Updated 3 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- Predicting regulatory DNA elements based on epigenomic signatures☆27Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆48Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 3 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago