aidenlab / JuiceboxLegacyLinks
OLD REPOSITORY - Go to
☆31Updated 8 years ago
Alternatives and similar repositories for JuiceboxLegacy
Users that are interested in JuiceboxLegacy are comparing it to the libraries listed below
Sorting:
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Updated 10 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- chia pet analysis software☆25Updated 7 years ago
- Fast fusion detection using kallisto☆79Updated 8 months ago
- ☆29Updated 9 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Chromatin segmentation in R☆19Updated 8 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- GTEx Visualizations☆66Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago