aidenlab / JuiceboxLegacyLinks
OLD REPOSITORY - Go to
☆31Updated 7 years ago
Alternatives and similar repositories for JuiceboxLegacy
Users that are interested in JuiceboxLegacy are comparing it to the libraries listed below
Sorting:
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Fast fusion detection using kallisto☆79Updated 6 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Galaxy RNA workbench☆41Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 9 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- SeqMonk NGS visualisation and analysis tool☆50Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- A RepSeq processing swiss-knife☆41Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- ☆29Updated 8 months ago