falconcomputing / falcon-genomeLinks
Falcon Accelerated Genomics Pipelines
☆15Updated 5 years ago
Alternatives and similar repositories for falcon-genome
Users that are interested in falcon-genome are comparing it to the libraries listed below
Sorting:
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 9 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 6 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 5 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Updated 2 years ago
- ☆12Updated 2 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 4 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆57Updated 2 weeks ago
- Parallel read alignment and variant calling using MapReduce☆19Updated 6 years ago
- ☆12Updated 11 months ago
- ☆15Updated 8 years ago
- ☆25Updated 4 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆51Updated 3 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆14Updated 11 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆36Updated 4 months ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆46Updated last week
- micro-read Fast Alignment Search Tool☆19Updated 6 years ago
- slow5lib is a software library for reading & writing SLOW5 files.☆47Updated last month
- ☆49Updated 3 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆83Updated 3 years ago
- generating hardware accelerators for pangenomic graph queries☆38Updated last month
- Tools for handling HiC and 5C data☆24Updated last year
- ☆20Updated 4 years ago
- ☆13Updated 3 weeks ago