lindenb / jbwaLinks
Java Bindings (JNI) for bwa
☆20Updated 8 years ago
Alternatives and similar repositories for jbwa
Users that are interested in jbwa are comparing it to the libraries listed below
Sorting:
- Various algorithms for analysing genomics data☆254Updated this week
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆207Updated 4 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆280Updated 6 months ago
- Tools for working with genomic and high throughput sequencing data.☆348Updated last week
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆159Updated 3 years ago
- Structural variation and indel detection by local assembly☆249Updated 2 months ago
- A tool for estimating repeat sizes☆199Updated last year
- ABRA2☆95Updated 2 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- ☆82Updated 6 years ago
- Population-scale genotyping using pangenome graphs☆195Updated 10 months ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆236Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- The Platinum Genomes Truthset☆89Updated 8 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆217Updated last year
- BWA-MEME: Faster BWA-MEM2 using learned-index☆130Updated last year
- A structural variation pipeline for short-read sequencing☆196Updated this week
- DRAGEN open-source mapper☆179Updated 2 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- A minimap2 frontend for PacBio native data formats☆205Updated 2 weeks ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 9 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated this week
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Updated 3 years ago