lindenb / jbwa
Java Bindings (JNI) for bwa
☆19Updated 7 years ago
Related projects: ⓘ
- Various algorithms for analysing genomics data☆189Updated this week
- Annotation of VCF variants with functional impact and from databases (executable+library)☆56Updated last week
- High performance data storage for importing, querying and transforming variants.☆93Updated 2 weeks ago
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- VarDict Java port☆127Updated 8 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 3 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆69Updated 6 years ago
- ☆81Updated 5 years ago
- ☆119Updated this week
- ABRA2☆90Updated last year
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆63Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆92Updated 3 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆91Updated last year
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆43Updated 7 months ago
- NEAT read simulation tools☆95Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆51Updated last year
- SV detection from paired end reads mapping☆113Updated 5 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆250Updated 8 months ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆93Updated 3 months ago
- Workflows for germline short variant discovery with GATK4☆133Updated 3 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆96Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆187Updated 3 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- ☆94Updated 11 months ago
- The DevNet project on github stores the PacBio DevNet website.☆114Updated 6 years ago
- SV caller for nanopore data☆89Updated 4 years ago
- A tool for somatic structural variant calling using long reads☆99Updated this week
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆52Updated 8 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆94Updated 2 years ago