lindenb / jbwa
Java Bindings (JNI) for bwa
☆19Updated 8 years ago
Alternatives and similar repositories for jbwa:
Users that are interested in jbwa are comparing it to the libraries listed below
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆70Updated 7 years ago
- The Platinum Genomes Truthset☆86Updated 7 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- A tool for profiling long STRs from short reads☆94Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 5 months ago
- NEAT read simulation tools☆97Updated 2 years ago
- ☆82Updated 6 years ago
- Structural Variant Index☆71Updated 2 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 2 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆78Updated 2 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆81Updated 4 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- ☆39Updated 10 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- Somatic structural variant caller for long-read data☆60Updated this week
- A collection of command line tools for working with sequencing data☆51Updated this week
- ☆48Updated 5 months ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- ABRA2☆92Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated 2 weeks ago
- Assembly Based ReAligner☆72Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last week
- A tool for somatic structural variant calling using long reads☆115Updated this week
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago