lindenb / jbwa
Java Bindings (JNI) for bwa
☆19Updated 8 years ago
Alternatives and similar repositories for jbwa:
Users that are interested in jbwa are comparing it to the libraries listed below
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- ABRA2☆92Updated 2 years ago
- A tool for profiling long STRs from short reads☆96Updated 4 years ago
- NEAT read simulation tools☆98Updated 2 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 4 months ago
- ☆119Updated 5 months ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- ☆82Updated 6 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Read visualizer for structural variants☆82Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆156Updated last year
- Small utilities for working with fastq sequence files.☆122Updated 2 years ago
- Tools for early stage alignment file processing☆93Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆83Updated 6 months ago
- Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations☆14Updated 3 weeks ago
- Structural Variant Index☆72Updated 4 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 10 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- ☆15Updated 8 years ago
- Structural variation and indel detection by local assembly☆244Updated last month
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago