MauricioCarneiro / PairHMM
Optimization of a Haplotype PairHMM class for GPU processing
☆24Updated 8 years ago
Alternatives and similar repositories for PairHMM:
Users that are interested in PairHMM are comparing it to the libraries listed below
- ☆15Updated 7 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 5 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆33Updated 3 months ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- Falcon Accelerated Genomics Pipelines☆15Updated 5 years ago
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆48Updated 2 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆31Updated 4 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 8 months ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated 8 months ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆18Updated last month
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Updated 3 years ago
- A C++14 library for NGS data formats☆40Updated 5 years ago
- Scalable mpi aligner base on BWA☆7Updated 4 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 4 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆12Updated last year
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Updated 7 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Global alignment and alignment extension☆130Updated last year
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- bwa-aln-xeon-phi optimizes bwa aln performance on both Xeon and Xeon Phi platform, and support symmetric running model on Xeon and Xeon P…☆17Updated 10 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago