Optimization of a Haplotype PairHMM class for GPU processing
☆24Jan 31, 2017Updated 9 years ago
Alternatives and similar repositories for PairHMM
Users that are interested in PairHMM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accelerated kernel library for genomics☆111Jul 7, 2025Updated 10 months ago
- Falcon Accelerated Genomics Pipelines☆15Oct 1, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 5 months ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- ☆15Feb 25, 2017Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆12Sep 25, 2024Updated last year
- Statistical Distributions from R☆12Apr 24, 2014Updated 12 years ago
- ☆23May 21, 2025Updated last year
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 11 years ago
- An HLA star-calling tool for PacBio HiFi data types☆23Feb 26, 2025Updated last year
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- ☆12Sep 11, 2025Updated 8 months ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆21Mar 24, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆20May 14, 2025Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year
- gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling☆15Nov 6, 2025Updated 6 months ago
- Fast interval intersection library☆44Aug 20, 2025Updated 9 months ago
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- ☆20Mar 31, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆22Dec 14, 2024Updated last year
- Global alignment and alignment extension☆142Jun 27, 2023Updated 2 years ago
- Source of BLAS via BLIS☆13May 6, 2024Updated 2 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- Read alignment with a multi-genome reference☆23Jan 14, 2020Updated 6 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 6 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- The official repository of the local FPGA Development Kit.☆22Apr 30, 2019Updated 7 years ago
- AFU framework for streaming applications with CAPI.☆13Mar 5, 2018Updated 8 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Ultimate DPDK System Enabling Expert☆11May 3, 2019Updated 7 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago