MauricioCarneiro / PairHMMLinks
Optimization of a Haplotype PairHMM class for GPU processing
☆24Updated 8 years ago
Alternatives and similar repositories for PairHMM
Users that are interested in PairHMM are comparing it to the libraries listed below
Sorting:
- Falcon Accelerated Genomics Pipelines☆15Updated 5 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 9 months ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 6 years ago
- Accelerated kernel library for genomics☆108Updated last month
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆36Updated 4 months ago
- A C++14 library for NGS data formats☆39Updated 6 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆51Updated 3 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- bwa-aln-xeon-phi optimizes bwa aln performance on both Xeon and Xeon Phi platform, and support symmetric running model on Xeon and Xeon P…☆17Updated 10 years ago
- ☆15Updated 8 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- ☆49Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆12Updated 2 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 5 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆17Updated 2 years ago
- Global alignment and alignment extension☆134Updated 2 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- micro-read Fast Alignment Search Tool☆19Updated 6 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- Compressive Read-mapping Accelerator☆14Updated 8 years ago
- Parallel read alignment and variant calling using MapReduce☆19Updated 6 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆83Updated 3 years ago
- ☆30Updated 8 years ago