broadinstitute / gatk-protected
Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
☆33Updated 7 years ago
Alternatives and similar repositories for gatk-protected:
Users that are interested in gatk-protected are comparing it to the libraries listed below
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- ☆78Updated 11 years ago
- Tools for early stage alignment file processing☆93Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- ☆68Updated 2 years ago
- Read visualizer for structural variants☆83Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- ☆21Updated 4 years ago
- ☆94Updated 2 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated last week
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Multi-sample somatic variant caller☆50Updated 3 years ago
- See the main fork of this repository here >>>☆38Updated 2 months ago