broadinstitute / gatk-protectedLinks
Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
☆32Updated 8 years ago
Alternatives and similar repositories for gatk-protected
Users that are interested in gatk-protected are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- ☆78Updated 11 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- ☆69Updated 3 years ago
- A genotype query interface.☆136Updated 4 years ago
- ☆95Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- ☆82Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 8 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago