enzorucci / SWIFOLDLinks
Smith-Waterman Acceleration on Intel’s FPGA with OpenCL for Long DNA Sequences
☆18Updated 6 years ago
Alternatives and similar repositories for SWIFOLD
Users that are interested in SWIFOLD are comparing it to the libraries listed below
Sorting:
- Co-processor for whole genome alignment☆13Updated 5 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 7 months ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Updated 7 years ago
- A benchmark suite to study the performance characteristics of genomics applications☆32Updated 8 months ago
- Falcon Merlin Compiler☆41Updated 5 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆19Updated 6 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 6 years ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆31Updated 2 years ago
- Chisel Project for Integrating RTL code into SDAccel☆17Updated 7 years ago
- ☆33Updated 9 months ago
- Falcon Accelerated Genomics Pipelines☆15Updated 5 years ago
- ☆29Updated 6 years ago
- A high-level performance analysis tool for FPGA-based accelerators☆20Updated 8 years ago
- Streaming Message Interface: High-Performance Distributed Memory Programming on Reconfigurable Hardware☆16Updated 3 years ago
- generating hardware accelerators for pangenomic graph queries☆38Updated this week
- ☆14Updated 7 months ago
- Introductory examples for using PYNQ with Alveo☆51Updated 2 years ago
- Chisel wrapper and accelerators for Columbia's Embedded Scalable Platform (ESP)☆24Updated 5 years ago
- [DAC 2020] Analysis and Optimization of the Implicit Broadcasts in FPGA HLS to Improve Maximum Frequency☆32Updated 4 years ago
- Stencil with Optimized Dataflow Architecture☆16Updated last year
- TAPA is a dataflow HLS framework that features fast compilation, expressive programming model and generates high-frequency FPGA accelerat…☆19Updated 10 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- ☆12Updated 9 months ago
- A novel spatial accelerator for horizontal diffusion weather stencil computation, as described in ICS 2023 paper by Singh et al. (https:/…☆19Updated last year
- Rodinia Benchmark Suite for OpenCL-based FPGAs☆31Updated 2 years ago
- HLS for Networks-on-Chip☆35Updated 4 years ago
- Collaborative Execution Strategies for Heterogeneous CPU-FPGA Architectures☆11Updated 6 years ago