hacchy1983 / CWL-workflows
Workflows written in common workflow language (CWL)
☆14Updated 6 years ago
Alternatives and similar repositories for CWL-workflows:
Users that are interested in CWL-workflows are comparing it to the libraries listed below
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 4 years ago
- Basic, no assumptions, multi-pileup☆24Updated 10 years ago
- NBDC/DBCLS BioHackathon 2015☆8Updated 5 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Updated 2 years ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆24Updated 3 years ago
- Illumina analysis pipeline☆14Updated 4 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 3 weeks ago
- Data Standards Hackathon for NGS based typing.☆13Updated last month
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 6 months ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 2 months ago
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Updated 5 years ago
- ☆11Updated 8 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆29Updated 2 years ago
- Genomics Research Container Architecture☆48Updated 5 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆19Updated 2 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- Data portal for submitting and viewing genomic data☆13Updated this week
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- Common Workflow Language definition files for workflows introduced in DAT2☆11Updated 2 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated 2 weeks ago
- About Workflow related meetup☆14Updated 3 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago