Workflows written in common workflow language (CWL)
☆14Dec 15, 2018Updated 7 years ago
Alternatives and similar repositories for CWL-workflows
Users that are interested in CWL-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Nov 3, 2025Updated 4 months ago
- Data Profiling and Basic Quality Assessment tool, for the very beginning phase of your project.☆23May 27, 2024Updated last year
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Nov 7, 2022Updated 3 years ago
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 3 years ago
- Accumulating container resource usage with workflow metadata☆19Mar 17, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources☆30Nov 14, 2018Updated 7 years ago
- Yet Another CWL Engine by Golang☆18Mar 19, 2019Updated 7 years ago
- ☆13Aug 14, 2018Updated 7 years ago
- The minimum and most straightforward way to check if command exists and where the executable is, without spawning child_process.☆63Feb 14, 2026Updated last month
- Trigger CWL workflows via GA4GH WES and TES☆18Jan 19, 2026Updated 2 months ago
- Literate Computing for Reproducible Infrastructure - Elasticsearch Practice☆21May 11, 2018Updated 7 years ago
- Dockerfile for Literate Computing(for Reproducible Infrastructure)☆22Mar 10, 2026Updated 2 weeks ago
- ☆11Apr 22, 2022Updated 3 years ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆25Jul 6, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Literate Computing for Reproducible Infrastructure - Hadoop Practice☆11Mar 5, 2026Updated 3 weeks ago
- Jupyter wrapper kernel that logs all cell outputs to files with history tracking☆10Feb 7, 2026Updated last month
- Generic SDK and CLI for GA4GH API services☆14Feb 2, 2026Updated last month
- A tool for checking the validity of JSON-LD objects☆14Sep 29, 2023Updated 2 years ago
- ☆33Mar 12, 2026Updated 2 weeks ago
- Erlang foreign function interface.☆25Feb 7, 2025Updated last year
- The WES API is a standard way to run and manage portable workflows.☆90Feb 20, 2026Updated last month
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- R packaged for Alpine Linux☆10Dec 10, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- High-reproducibility CWL runner powered by Guix☆22Jan 28, 2026Updated last month
- a simple blockchain (in Haskell) to illustrate basic concepts/operation☆29Mar 8, 2020Updated 6 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 2 years ago
- a tool to generate skeleton applications that mimic a real applications' parallel or distributed performance at a task level☆13Jan 11, 2017Updated 9 years ago
- Docker container for Illumina bcl2fastq☆11Aug 7, 2024Updated last year
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12Oct 26, 2025Updated 5 months ago
- CWL experimental grammar☆11Nov 16, 2025Updated 4 months ago
- Super small biological datasets for unit testing☆62Nov 6, 2019Updated 6 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆11Apr 3, 2023Updated 2 years ago
- http://a-terada.github.com/lamp/☆14Jul 14, 2023Updated 2 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- Yet another LLM command line interface☆16Dec 9, 2024Updated last year
- Generate command line parser using getopt_long☆16Dec 11, 2024Updated last year
- Even Realities Hub Simulator - multi application test environment☆43Updated this week