hacchy1983 / CWL-workflows
Workflows written in common workflow language (CWL)
☆14Updated 6 years ago
Alternatives and similar repositories for CWL-workflows:
Users that are interested in CWL-workflows are comparing it to the libraries listed below
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 7 months ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Updated 2 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Common Workflow Language definition files for workflows introduced in DAT2☆11Updated 2 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated this week
- ☆14Updated last month
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 3 months ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 6 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 4 years ago
- NBDC/DBCLS BioHackathon 2015☆8Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆29Updated 2 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- Illumina analysis pipeline☆14Updated 5 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Updated 5 years ago
- ☆11Updated 8 years ago
- A web wrapper for GeneValidator☆11Updated 4 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 2 months ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Updated 7 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 2 months ago