This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colony Niche Related to Clinical-outcomes in Small Cell Lung Cancer" paper.
☆16May 26, 2025Updated last year
Alternatives and similar repositories for CODEX_SCLC
Users that are interested in CODEX_SCLC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- ☆26Aug 24, 2023Updated 2 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆67May 31, 2026Updated 2 weeks ago
- ☆37Jun 4, 2024Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated last year
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- Helper functions for working with inForm data.☆24May 3, 2022Updated 4 years ago
- TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems☆20May 16, 2026Updated 3 weeks ago
- Profile purification of single-cell spatial transcriptomics data☆46May 28, 2026Updated 2 weeks ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated last week
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆23Dec 10, 2024Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- ☆21Nov 9, 2023Updated 2 years ago
- ☆15Apr 11, 2024Updated 2 years ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆16Mar 26, 2025Updated last year
- This project consists of three parts: Random forest model for GC diagnosis and Predict the survival outcomes of GC patient using RSF meth…☆32Nov 15, 2024Updated last year
- ☆37Oct 22, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆35Dec 29, 2020Updated 5 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- 基于pyqt和python-vlc开发的播放器demo，可以对阿里云视频直播进行监测☆10Mar 25, 2021Updated 5 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- ☆21May 6, 2025Updated last year
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 4 months ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Methods for decontamination of single cell data☆64Feb 16, 2025Updated last year
- The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…☆25Nov 30, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆25Dec 11, 2024Updated last year
- Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by meas…☆20Aug 14, 2023Updated 2 years ago
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated 5 months ago
- Multiview Intercellular SpaTial modeling framework☆73Jan 15, 2026Updated 4 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆34Jul 13, 2024Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 4 years ago