This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colony Niche Related to Clinical-outcomes in Small Cell Lung Cancer" paper.
☆16May 26, 2025Updated 9 months ago
Alternatives and similar repositories for CODEX_SCLC
Users that are interested in CODEX_SCLC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆13Oct 27, 2023Updated 2 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆37Apr 30, 2025Updated 10 months ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- ☆25Aug 24, 2023Updated 2 years ago
- Helper functions for working with inForm data.☆20May 3, 2022Updated 3 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- ☆36Jun 4, 2024Updated last year
- ☆61Dec 9, 2025Updated 3 months ago
- Functional Annotation for Single-Cell Transcriptomics☆11Jun 29, 2024Updated last year
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems☆20Apr 23, 2025Updated 11 months ago
- Profile purification of single-cell spatial transcriptomics data☆30Nov 13, 2025Updated 4 months ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆15Mar 1, 2026Updated 3 weeks ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆12Jun 24, 2023Updated 2 years ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆14Apr 11, 2024Updated last year
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆22Dec 10, 2024Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- ☆22Nov 9, 2023Updated 2 years ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆15Mar 26, 2025Updated 11 months ago
- This project consists of three parts: Random forest model for GC diagnosis and Predict the survival outcomes of GC patient using RSF meth…☆31Nov 15, 2024Updated last year
- ☆36Oct 22, 2025Updated 5 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Dec 29, 2020Updated 5 years ago
- 基于pyqt和python-vlc开发的播放器demo,可以对阿里云视频直播进行监测☆10Mar 25, 2021Updated 5 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated 2 years ago
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆17Dec 11, 2024Updated last year
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- ☆21May 6, 2025Updated 10 months ago
- The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…☆23Nov 30, 2022Updated 3 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Methods for decontamination of single cell data☆61Feb 16, 2025Updated last year
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated 3 months ago
- Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by meas…☆20Aug 14, 2023Updated 2 years ago
- Multiview Intercellular SpaTial modeling framework☆72Jan 15, 2026Updated 2 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Jul 13, 2024Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 4 years ago
- ☆33Feb 26, 2025Updated last year