GenomeRIK / tama
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
☆125Updated last year
Related projects: ⓘ
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆187Updated 2 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆143Updated 9 months ago
- ☆69Updated this week
- A tool to identify, orient, trim and rescue full length cDNA reads☆78Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆175Updated 4 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆123Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆205Updated 10 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆135Updated 4 months ago
- ☆139Updated last week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆105Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆178Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆125Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆233Updated last month
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆144Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆189Updated 8 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆89Updated last week
- ☆95Updated this week
- ☆184Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆199Updated 2 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆113Updated 2 years ago
- haplotypic duplication identification tool☆204Updated 8 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆196Updated this week
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆108Updated 2 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆130Updated this week
- A minimap2 frontend for PacBio native data formats☆170Updated 3 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆92Updated 8 months ago
- A bioinformatics tool for working with modified bases☆130Updated this week
- PASA software☆172Updated 9 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆113Updated 4 years ago