Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
☆187Apr 12, 2023Updated 3 years ago
Alternatives and similar repositories for tama
Users that are interested in tama are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆242Jun 24, 2026Updated 2 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆282Sep 26, 2023Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆279Aug 11, 2026Updated 3 weeks ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆72Jan 31, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆255Aug 11, 2026Updated 3 weeks ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 6 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 7 months ago
- k-mer based assembly evaluation☆353Jul 6, 2026Updated last month
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆261Aug 17, 2026Updated 2 weeks ago
- A universal toolkit for upstream processing of long RNA reads☆237Aug 26, 2026Updated last week
- A genomic k-mer counter (and sequence utility) with nice features.☆186Jul 21, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- software tools for haplotype assembly from sequence data☆232Feb 9, 2025Updated last year
- source code for EVM☆128Nov 29, 2024Updated last year
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆127Mar 18, 2024Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆243Dec 29, 2023Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆118Jul 23, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆284Jul 7, 2026Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆168Jul 15, 2026Updated last month
- Evaluation and polishing workflows for T2T genome assemblies☆167Jun 26, 2026Updated 2 months ago
- FamDB file format library and utilities☆49Jun 1, 2026Updated 3 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆245Sep 6, 2024Updated last year
- Evaluating genome assemblies☆125Mar 3, 2026Updated 6 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆182Jun 23, 2026Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 6 months ago
- ☆45Dec 29, 2025Updated 8 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆271Updated this week
- Long read production pipelines☆151Aug 11, 2026Updated 3 weeks ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆187Jul 30, 2026Updated last month
- ☆39Feb 22, 2023Updated 3 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago