nskvir / RepEnrich
RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
☆26Updated 2 years ago
Alternatives and similar repositories for RepEnrich:
Users that are interested in RepEnrich are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 6 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated 2 weeks ago
- ☆13Updated 7 years ago
- ☆30Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- ☆17Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- IDR☆31Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 7 months ago
- RNA editing tests☆16Updated 4 years ago
- Genomic Association Tester☆30Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆31Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- ☆23Updated 3 years ago
- ☆37Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 5 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago