The codes of "the Third Generation Sequencing of 111 rice genomes reveals a huge size of novel genome sequence in the RICE PAN-genome"
☆10Mar 29, 2022Updated 4 years ago
Alternatives and similar repositories for TGSRICEPAN
Users that are interested in TGSRICEPAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Jul 15, 2026Updated 3 months ago
- This is a modified version of EDTA -- zgtools☆20Sep 18, 2026Updated last month
- ☆18Nov 26, 2023Updated 2 years ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆32Apr 17, 2025Updated last year
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated last year
- ☆78Dec 4, 2019Updated 6 years ago
- ☆24May 31, 2024Updated 2 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 7 years ago
- How to fill gaps in genome of soybean☆12May 24, 2023Updated 3 years ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated last year
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- ☆22Sep 22, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆30Mar 4, 2022Updated 4 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆16Oct 29, 2023Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 3 months ago
- A Comparative Genomics Framework Integrating Synteny Visualization☆20May 6, 2026Updated 5 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 6 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆27Updated this week
- ☆25Feb 26, 2026Updated 7 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jan 19, 2022Updated 4 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Dec 30, 2023Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- HiCAT new project☆40May 18, 2025Updated last year
- Design gene specific KASP and CAPS/dCAPS primers for any species☆19Sep 19, 2022Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- ☆27Jun 8, 2022Updated 4 years ago
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆32Oct 31, 2023Updated 2 years ago
- repository for code used in analysis of open wild wheat consortium☆20Nov 23, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Oct 9, 2026Updated last week
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆18Mar 14, 2022Updated 4 years ago
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆23May 6, 2026Updated 5 months ago
- ☆45May 8, 2024Updated 2 years ago
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- ☆15May 31, 2020Updated 6 years ago
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 11 years ago