Codes for pear haplotype genome and pangenome graph construction
☆13Jun 22, 2026Updated 4 months ago
Alternatives and similar repositories for Pear_Haplotype_Genome
Users that are interested in Pear_Haplotype_Genome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago
- A Comparative Genomics Framework Integrating Synteny Visualization☆20May 6, 2026Updated 6 months ago
- ☆23Aug 21, 2026Updated 2 months ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- A R package for QTLseq.☆13Jun 17, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 5 years ago
- ☆25Feb 26, 2026Updated 8 months ago
- Daily usage script recording☆12Sep 23, 2026Updated last month
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆40May 29, 2026Updated 5 months ago
- Grapevine pangenome facilitates trait genetics and genomic breeding☆10May 8, 2024Updated 2 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆20Apr 1, 2024Updated 2 years ago
- Tools for Gene Expression Quantification in Polyploid Species☆13Sep 29, 2025Updated last year
- This is a modified version of EDTA -- zgtools☆20Updated this week
- ☆24May 31, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline for extracting Presence-Absence Variations (PAVs) in eukaryotic and prokaryotic genomes across multiple assemblies.☆11May 21, 2026Updated 5 months ago
- This is a modified version of EviAnn -- zgtools☆10Updated this week
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆25Jun 14, 2024Updated 2 years ago
- ☆52Jun 27, 2026Updated 4 months ago
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Oct 27, 2026Updated last week
- ☆12Jul 24, 2026Updated 3 months ago
- ☆29May 12, 2026Updated 5 months ago
- a Semi-automated pipeline for assembling T2T genome☆30Oct 16, 2025Updated last year
- A chromosome-level polyploid phasing scaffolding tool☆29Oct 19, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Post-verkko graph and assembly curation in Python.☆39Oct 24, 2026Updated last week
- a gap-filling tools of genome in complex region.☆28Dec 30, 2025Updated 10 months ago
- ☆16Jul 25, 2021Updated 5 years ago
- A fast, robust and accurate variant calling software for human germline DNA analysis☆15Jun 30, 2026Updated 4 months ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 3 years ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 7 months ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated last year
- ☆29Aug 15, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆27Jun 27, 2026Updated 4 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆33Oct 27, 2026Updated last week
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆74Oct 23, 2025Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆18Mar 14, 2022Updated 4 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆50Sep 22, 2025Updated last year