XiaofangJ / PhaseFinderLinks
A pipeline to computationally identify invertible DNA regions and quantify their orientations.
☆29Updated last year
Alternatives and similar repositories for PhaseFinder
Users that are interested in PhaseFinder are comparing it to the libraries listed below
Sorting:
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆78Updated last month
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 5 months ago
- ☆79Updated last week
- ☆62Updated last year
- ☆16Updated 2 years ago
- ☆54Updated 3 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- ☆24Updated 6 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 3 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆78Updated last month
- Prediction of prophages from bacterial genomes☆81Updated 4 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated this week
- ☆59Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆81Updated 10 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- ☆50Updated last month
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated 2 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆29Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- ☆31Updated 8 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆73Updated 5 months ago