Fundamental functions, annotation pipeline and constants for oktoberfest
☆13Jul 24, 2026Updated this week
Alternatives and similar repositories for spectrum_fundamentals
Users that are interested in spectrum_fundamentals are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated 5 months ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆22Aug 16, 2024Updated last year
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 4 months ago
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 4 months ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- Tools for treatment high res mass spectrum of natural organic matter samples☆13Aug 4, 2023Updated 2 years ago
- Confidence Estimation for Mass Spectrometry Proteomics☆14Jul 1, 2026Updated 3 weeks ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆33Mar 3, 2026Updated 4 months ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation of graph convolutional networks to predict chromatographic retention times.☆15Sep 7, 2021Updated 4 years ago
- ☆23Jun 11, 2026Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆162Jul 22, 2026Updated last week
- Rescoring and spectral library generation pipeline for proteomics.☆57Updated this week
- ☆43Updated this week
- A community dedicated to education of computer coding applied to mass spectrometry applications.☆51Jul 18, 2025Updated last year
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated last year
- modular & open DIA search☆112Updated this week
- Deep learning framework for proteomics☆156Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Moved to Codeberg, this repo is just a (temporary) mirror -- Yet a PreProcessor☆14Apr 17, 2026Updated 3 months ago
- The Interactive Peptide Spectral Annotator☆23Jun 9, 2020Updated 6 years ago
- An open-source Python package to unify raw MS data accession and storage.☆33Updated this week
- A list of tools on proteomics using deep learning☆109May 14, 2026Updated 2 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Apr 22, 2026Updated 3 months ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jul 17, 2026Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆81Updated this week
- Tufte style plots for the browser☆15Dec 7, 2022Updated 3 years ago
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆34Jun 26, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆26Apr 17, 2026Updated 3 months ago
- ☆34Jul 16, 2026Updated last week
- Scoring functions to compare MS/MS spectra☆11Feb 22, 2017Updated 9 years ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆99Jun 3, 2026Updated last month
- ☆12Jan 14, 2023Updated 3 years ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆36Jun 13, 2026Updated last month
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆29Aug 16, 2023Updated 2 years ago