Fundamental functions, annotation pipeline and constants for oktoberfest
☆13May 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for spectrum_fundamentals
Users that are interested in spectrum_fundamentals are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17May 6, 2026Updated 3 weeks ago
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated 3 months ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆22Aug 16, 2024Updated last year
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 2 months ago
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆23May 11, 2026Updated 2 weeks ago
- modular & open DIA search☆108Updated this week
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- An open-source Python package to unify raw MS data accession and storage.☆32Apr 13, 2026Updated last month
- Tools for treatment high res mass spectrum of natural organic matter samples☆12Aug 4, 2023Updated 2 years ago
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- Confidence Estimation for Mass Spectrometry Proteomics☆14May 28, 2025Updated last year
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Implementation of graph convolutional networks to predict chromatographic retention times.☆15Sep 7, 2021Updated 4 years ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆75Apr 21, 2026Updated last month
- ☆40May 13, 2026Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆56May 13, 2026Updated 2 weeks ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆155May 11, 2026Updated 2 weeks ago
- ☆29May 20, 2025Updated last year
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deep learning framework for proteomics☆152Apr 21, 2026Updated last month
- A community dedicated to education of computer coding applied to mass spectrometry applications.☆52Jul 18, 2025Updated 10 months ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆48May 22, 2026Updated last week
- Moved to Codeberg, this repo is just a (temporary) mirror -- Yet a PreProcessor☆14Apr 17, 2026Updated last month
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆94Nov 5, 2025Updated 6 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Apr 22, 2026Updated last month
- A list of tools on proteomics using deep learning☆108May 14, 2026Updated 2 weeks ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jun 18, 2025Updated 11 months ago
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆23Apr 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Interactive Peptide Spectral Annotator☆23Jun 9, 2020Updated 5 years ago
- Tufte style plots for the browser☆15Dec 7, 2022Updated 3 years ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆95Mar 18, 2026Updated 2 months ago
- Democratizing ML in proteomics☆53May 6, 2026Updated 3 weeks ago
- ☆12Jan 14, 2023Updated 3 years ago
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆30Mar 19, 2026Updated 2 months ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆22May 20, 2026Updated last week