fmi-basel / glib-nature2018-materialsLinks
Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"
☆11Updated 5 years ago
Alternatives and similar repositories for glib-nature2018-materials
Users that are interested in glib-nature2018-materials are comparing it to the libraries listed below
Sorting:
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 5 months ago
- ☆13Updated this week
- ☆22Updated 5 years ago
- Minimum Information about Tissue Imaging☆20Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- ☆74Updated this week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Analysis of smFISH data☆11Updated 7 years ago
- Spatial analysis of FISH data☆32Updated 5 months ago
- ☆29Updated last year
- MERFISH decoding software☆26Updated 2 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
- ☆29Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- ☆15Updated last year
- A plugin to visualise 3D spatial single cell omics☆21Updated last week
- ☆22Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆34Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- ☆61Updated last week
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- ☆27Updated last year
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Updated last year
- Python package for reading imaging mass cytometry (IMC) files☆16Updated last week
- A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆57Updated this week