fmi-basel / glib-nature2018-materials
Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"
☆11Updated 4 years ago
Alternatives and similar repositories for glib-nature2018-materials
Users that are interested in glib-nature2018-materials are comparing it to the libraries listed below
Sorting:
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- ☆21Updated 4 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 2 months ago
- ☆29Updated last year
- MERFISH decoding software☆26Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- ☆11Updated 6 years ago
- ☆13Updated 3 weeks ago
- ☆26Updated 7 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 7 years ago
- Analysis of smFISH data☆11Updated 6 years ago
- ☆15Updated 8 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- ☆25Updated 5 years ago
- Python package for reading imaging mass cytometry (IMC) files☆15Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆18Updated last week
- ☆14Updated 3 years ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Spatial analysis of FISH data☆30Updated 11 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Image Mass Cytometry analysis pipeline☆25Updated 2 weeks ago
- ☆21Updated 2 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 3 months ago