fmi-basel / glib-nature2018-materialsLinks
Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"
☆11Updated 4 years ago
Alternatives and similar repositories for glib-nature2018-materials
Users that are interested in glib-nature2018-materials are comparing it to the libraries listed below
Sorting:
- ☆12Updated 3 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 2 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆22Updated 5 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- ☆11Updated 6 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last month
- ☆29Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- ☆15Updated 10 months ago
- MERFISH decoding software☆26Updated 2 years ago
- ☆65Updated last week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated 6 months ago
- Analysis of smFISH data☆11Updated 6 years ago
- Spatial analysis of FISH data☆31Updated 2 months ago
- ☆27Updated 10 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆28Updated 10 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- ☆26Updated 5 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆29Updated last week
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- ☆15Updated 3 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆34Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- ☆54Updated last week
- ☆22Updated 2 years ago
- Python package for reading imaging mass cytometry (IMC) files☆15Updated last week