saezlab / transcriptutorialLinks
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
☆55Updated 2 years ago
Alternatives and similar repositories for transcriptutorial
Users that are interested in transcriptutorial are comparing it to the libraries listed below
Sorting:
- ☆64Updated last year
- R package for Pathway RespOnsive GENe activity inference☆105Updated 2 years ago
- ☆80Updated last year
- ☆57Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆73Updated 3 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆65Updated 11 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- ☆47Updated 4 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated last week
- ☆55Updated 4 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆68Updated 10 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆38Updated 5 years ago
- ☆27Updated 7 months ago
- ☆39Updated 3 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 5 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆71Updated 3 weeks ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- An R interface to enrichR☆92Updated 3 months ago
- ☆46Updated 3 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆29Updated 4 years ago
- collection of notebooks with different cytoscape workflows☆49Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year