saezlab / transcriptutorialLinks
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
☆56Updated 2 years ago
Alternatives and similar repositories for transcriptutorial
Users that are interested in transcriptutorial are comparing it to the libraries listed below
Sorting:
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- ☆62Updated 5 years ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- Normalize CITEseq Data☆66Updated 6 months ago
- ☆76Updated last year
- R package to access DoRothEA's regulons☆151Updated last year
- ☆87Updated last month
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 10 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆115Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated 3 weeks ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 6 months ago
- ☆73Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆129Updated 3 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated last year
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- R package for the analysis of single-cell immune repertoires☆43Updated 8 months ago
- An R interface to enrichR☆93Updated 8 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- ☆67Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆24Updated 3 years ago