An R Package for Geneset Enrichment Workflows
☆79Dec 11, 2025Updated 4 months ago
Alternatives and similar repositories for hypeR
Users that are interested in hypeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Explore the cancer relevance of your gene list☆54Dec 17, 2025Updated 4 months ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- Bioconductor package for management of multi-assay data☆74Mar 28, 2026Updated 3 weeks ago
- Gene set variation analysis☆237Updated this week
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R client for the OmniPath web service☆163Mar 25, 2026Updated 3 weeks ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆68Dec 3, 2025Updated 4 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 6 years ago
- Seurat meets tidyverse. The best of both worlds.☆164Mar 3, 2026Updated last month
- A General Framework for Consensus Partitioning☆64Jan 30, 2026Updated 2 months ago
- Find hot data sets in your area (of research)!☆16Dec 20, 2018Updated 7 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 6 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated last year
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Aug 1, 2023Updated 2 years ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 3 years ago
- Interactive benchmarking of ranking and assignment methods☆16Mar 20, 2026Updated 3 weeks ago
- Fast Gene Set Enrichment Analysis☆439Jan 2, 2026Updated 3 months ago
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆178Apr 2, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 4 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated 2 months ago
- 5-day workshop on Metabolomics and Data Analysis☆18Sep 1, 2019Updated 6 years ago
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆111Nov 24, 2025Updated 4 months ago
- The blog of tidyomics☆14Jul 12, 2025Updated 9 months ago
- R package of utilities for handling paths, files and directories☆19Jan 14, 2019Updated 7 years ago
- fastqcr: Quality Control of Sequencing Data☆77Aug 3, 2023Updated 2 years ago
- ☆15Jan 13, 2021Updated 5 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Dec 4, 2025Updated 4 months ago
- Prioritizing Cancer Driver Genes Using Genomics Data☆17Dec 22, 2025Updated 3 months ago
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- ☆11Mar 1, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆181Dec 18, 2021Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Feb 23, 2026Updated last month