waldronlab / data-science-seminarLinks
Topics In Data Science and Bioinformatics
☆79Updated last year
Alternatives and similar repositories for data-science-seminar
Users that are interested in data-science-seminar are comparing it to the libraries listed below
Sorting:
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆75Updated 5 months ago
- Multi-omics studies are available here☆52Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 2 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆69Updated 2 weeks ago
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- A package that provides data analysis pipeline for flow cytometry.☆79Updated 3 months ago
- ☆55Updated 9 months ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 months ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 9 months ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- Statistical power studies for multi-omics experiments.☆32Updated 10 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- A General Framework for Consensus Partitioning☆63Updated 10 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated last month
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- ☆63Updated 8 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆55Updated 4 years ago