qiaoqiaoLF / MxDNALinks
[NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA
☆20Updated 6 months ago
Alternatives and similar repositories for MxDNA
Users that are interested in MxDNA are comparing it to the libraries listed below
Sorting:
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆52Updated last year
- ☆45Updated 2 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆125Updated 11 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆104Updated 2 months ago
- ☆74Updated last year
- Primary RNA sequence model☆39Updated last year
- ☆14Updated this week
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆116Updated 8 months ago
- ☆23Updated 4 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- ☆91Updated last year
- Benchmarks for classification of genomic sequences☆162Updated 2 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆48Updated last year
- ☆81Updated 2 months ago
- Genomic Pre-trained Network☆298Updated this week
- RiboNucleic Acid (RNA) Language Model☆132Updated 3 weeks ago
- ☆21Updated 6 months ago
- ☆80Updated 2 years ago
- ☆73Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆199Updated 2 months ago
- Inference and numerics for multi-hybrid AI model architectures☆80Updated 2 months ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆260Updated 5 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆94Updated last month
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆82Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Updated last year
- Contextual AI models for single-cell protein biology☆88Updated 8 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆431Updated 2 months ago