qiaoqiaoLF / MxDNAView external linksLinks
[NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA
☆22Apr 2, 2025Updated 10 months ago
Alternatives and similar repositories for MxDNA
Users that are interested in MxDNA are comparing it to the libraries listed below
Sorting:
- ☆16Oct 3, 2025Updated 4 months ago
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆17Jun 19, 2025Updated 7 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 6 months ago
- ☆15Updated this week
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆60Aug 2, 2024Updated last year
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated last year
- ☆15Dec 15, 2025Updated 2 months ago
- ☆13Apr 23, 2025Updated 9 months ago
- A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription☆11Aug 3, 2024Updated last year
- official code for "BoostStep: Boosting mathematical capability of Large Language Models via improved single-step reasoning"☆37Jan 21, 2025Updated last year
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14Feb 7, 2026Updated last week
- ☆42Updated this week
- ☆23Jan 9, 2026Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- Virus Identification☆25May 26, 2025Updated 8 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- ☆27Apr 15, 2025Updated 10 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆459Jan 1, 2026Updated last month
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆33Jun 22, 2025Updated 7 months ago
- ☆33Feb 9, 2026Updated last week
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33May 16, 2025Updated 9 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆225Jun 17, 2025Updated 7 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆87Dec 10, 2025Updated 2 months ago
- LLMRouterBench: A Massive Benchmark and Unified Framework for LLM Routing☆34Jan 30, 2026Updated 2 weeks ago
- ☆11Apr 12, 2022Updated 3 years ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆758Apr 22, 2025Updated 9 months ago
- Linear Attention for Efficient Bidirectional Sequence Modeling☆15May 13, 2025Updated 9 months ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Jun 3, 2025Updated 8 months ago
- ☆11Jun 13, 2024Updated last year
- ☆13Dec 3, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- PlantCAD: cross-species modeling of plant genomes☆62Jan 4, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆46Jan 27, 2026Updated 2 weeks ago
- API for the IGS data portal☆11May 6, 2021Updated 4 years ago
- ☆11Oct 24, 2024Updated last year
- Codes to run deltaSVM models to predict allelic TF binding☆10Apr 5, 2021Updated 4 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- DeepTraLog: Trace-Log Combined Microservice Anomaly Detection through Graph-based Deep Learning☆13Mar 24, 2023Updated 2 years ago