[NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA
☆23Apr 2, 2025Updated last year
Alternatives and similar repositories for MxDNA
Users that are interested in MxDNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- (IROS 2025) RRT*former: Environment-Aware Sampling-Based Motion Planning using Transformer☆19Feb 28, 2025Updated last year
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated last year
- ☆22Jun 11, 2026Updated 4 months ago
- ☆19Mar 31, 2026Updated 6 months ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆66Aug 2, 2024Updated 2 years ago
- official code for "BoostStep: Boosting mathematical capability of Large Language Models via improved single-step reasoning"☆37Jan 21, 2025Updated last year
- A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription☆16Mar 17, 2026Updated 7 months ago
- ☆30Dec 15, 2025Updated 10 months ago
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆21Apr 16, 2026Updated 6 months ago
- ☆52Mar 22, 2026Updated 6 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated 3 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆134Oct 31, 2024Updated last year
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆33Sep 1, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Python language bindings for bwa☆12Jul 19, 2026Updated 2 months ago
- ☆11Jun 13, 2024Updated 2 years ago
- ☆27Apr 15, 2025Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆516Jan 1, 2026Updated 9 months ago
- Simulations for learning-based Conformal Tube MPC in interactive multi-agent systems.☆15May 14, 2026Updated 5 months ago
- An Integrated Library for Tuning, Deploying and Interpreting Genomic Models☆131Apr 5, 2026Updated 6 months ago
- Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL☆20May 28, 2025Updated last year
- ☆21Dec 20, 2025Updated 9 months ago
- ☆12Jul 3, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆132Dec 10, 2025Updated 10 months ago
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆58Sep 5, 2026Updated last month
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆34Jun 22, 2025Updated last year
- [NeurIPS 2025] Official implementation of HiFlow: Training-free High-Resolution Image Generation with Flow-Aligned Guidance☆90Sep 18, 2025Updated last year
- Tensorflow: Generalizing Across Domains via Cross-Gradient Training☆15May 11, 2018Updated 8 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 5 years ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆810Apr 22, 2025Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- Collection of peptide de novo sequencing algorithms by BEAM labs☆32Sep 20, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Oct 7, 2026Updated last week
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆253Mar 18, 2026Updated 6 months ago
- Virus Identification☆29May 26, 2025Updated last year
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 8 years ago
- Gene perturbation prediction using LLM embeddings☆17Sep 16, 2026Updated last month