Alternatives and similar repositories for MxDNA

Users that are interested in MxDNA are comparing it to the libraries listed below

• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆50Updated last year
• jimmylihui / GenBench
  ☆23Updated 3 months ago
• TencentAILabHealthcare / DNAGPT
  ☆43Updated 2 years ago
• songlab-cal / TraitGym
  ☆12Updated 2 weeks ago
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆92Updated last month
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆124Updated 10 months ago
• HelloWorldLTY / UKBioLM
  ☆21Updated 5 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 8 months ago
• jkobject / geneformer
  ☆77Updated 3 weeks ago
• lingxusb / megaDNA
  ☆70Updated 10 months ago
• MAGICS-LAB / DNABERT_S
  [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
  ☆113Updated 7 months ago
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆38Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆92Updated last year
• Genentech / regLM
  Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
  ☆46Updated 11 months ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated 2 years ago
• a96123155 / UTR-LM
  ☆90Updated 11 months ago
• Zymrael / vortex
  Inference and numerics for multi-hybrid AI model architectures
  ☆76Updated 3 weeks ago
• amberT15 / LLM_eval
  Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"
  ☆22Updated last year
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• ML-Bioinfo-CEITEC / genomic_benchmarks
  Benchmarks for classification of genomic sequences
  ☆157Updated last month
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 5 months ago
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆378Updated this week
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆125Updated 3 months ago
• apeterswu / Awesome-Bio-Foundation-Models
  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
  ☆254Updated 3 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆88Updated 7 months ago
• ni-lab / personalized-expression-benchmark
  Evaluating genomic sequence models for explaining personalized expression variation
  ☆19Updated last year
• EperLuo / scDiffusion-X
  Diffusion Model for Single-Cell Multiome Data Generation and Analysis
  ☆25Updated 5 months ago
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆94Updated this week
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆71Updated 6 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆72Updated last week