☆13Apr 23, 2025Updated 11 months ago
Alternatives and similar repositories for ConvNova
Users that are interested in ConvNova are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Dec 15, 2025Updated 3 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆18Jun 19, 2025Updated 9 months ago
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 2 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 7 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Oct 4, 2024Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- Effect of tokenization on transformers for biological sequence☆22Dec 31, 2025Updated 2 months ago
- GRUD is a genotype imputation based on deep learning algorithms☆12Jul 3, 2024Updated last year
- Script used to identify de novo variants from sequencing data.☆12Mar 2, 2017Updated 9 years ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated 11 months ago
- ☆12Oct 10, 2024Updated last year
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆227Updated this week
- Convolutional autoencoder for genotype data☆15Feb 22, 2022Updated 4 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 2 years ago
- Linear Attention for Efficient Bidirectional Sequence Modeling☆16May 13, 2025Updated 10 months ago
- Code and dataset for SNP2Vec paper☆21May 12, 2023Updated 2 years ago
- Official implementation of "Hydra: Bidirectional State Space Models Through Generalized Matrix Mixers"☆170Jan 30, 2025Updated last year
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Aug 13, 2025Updated 7 months ago
- A fine-mapping method integrating GWAS summary statistics and functional annotation data☆11Dec 28, 2023Updated 2 years ago
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- ☆48Updated this week
- PathPiece tokenizer☆14Nov 10, 2024Updated last year
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated last year
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆55Jan 24, 2026Updated 2 months ago
- ☆20Aug 14, 2025Updated 7 months ago
- [NeurIPS 2025] Beyond Masked and Unmasked: Discrete Diffusion Models via Partial Masking☆24Mar 18, 2026Updated last week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- the MAVISp database for annotations and predictions of variant effects at the protein level☆13Mar 17, 2026Updated last week
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- ArXiv 每日论文推送助手 自动抓取 ArXiv 最新 AI 论文，使用 DeepSeek 进行深度分析，并推送到飞书。☆39Feb 5, 2026Updated last month
- ☆16Oct 3, 2025Updated 5 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- ☆25Feb 23, 2026Updated last month
- CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)☆28Jan 19, 2023Updated 3 years ago
- The code impliments for paper "MHNF: Multi-hop Heterogeneous Neighborhood information Fusion graph representation learning.”☆11Oct 29, 2023Updated 2 years ago